KEGG   Oncorhynchus kisutch (coho salmon): 109902639
Entry
109902639         CDS       T09179                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03030  DNA replication
oki03410  Base excision repair
oki03420  Nucleotide excision repair
oki03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109902639
   03410 Base excision repair
    109902639
   03420 Nucleotide excision repair
    109902639
   03430 Mismatch repair
    109902639
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oki03032]
    109902639
   03036 Chromosome and associated proteins [BR:oki03036]
    109902639
   03400 DNA repair and recombination proteins [BR:oki03400]
    109902639
DNA replication proteins [BR:oki03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109902639
  DNA Replication Termination Factors
   ELG1-RFC complex
    109902639
Chromosome and associated proteins [BR:oki03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109902639
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109902639
  Check point factors
   HRAD17(Rad24)-RFC complex
    109902639
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_16 AAA_22 AAA_30 AAA_assoc_2 Mg_chelatase AAA_11 DUF815 RuvB_N AAA_24 SLFN-g3_helicase AAA_14 AAA_28 AAA_5 Gp44_lid AAA_19 Cdc6_lid ResIII AAA_7 ATPase_2 RPA_interact_N Kinesin DNAX_ATPase_lid
Other DBs
NCBI-GeneID: 109902639
NCBI-ProteinID: XP_020354753
Ensembl: ENSOKIG00005018589
LinkDB
Position
LG13:29886205..29893904
AA seq 357 aa
MQAFLKGTSTQGTRPLKEKGTGTSGEKKQKSVPWVEKYRPKCMEDVAFQEEVVAVLKKTI
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKRF
AQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRI
IEPLTSRCSKFRFKPLANQVQEERLLDICDKENLKYSKEGIAALVKVSEGDLRKAITFLQ
SAARLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKGTFEKLEIAVGNMVDEGYAATQI
INQLHEAIIEEELNDKQKSAITEKMAVVDKCLVDGADEYLQMLSMCSVIMQQATLSN
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcaggcgtttttgaaaggaacatcaactcaaggcaccagacctctgaaagagaaaggt
acagggaccagtggagagaagaagcagaaatctgtcccctgggtagagaaatatagacca
aaatgtatggaagacgtggcgtttcaagaggaggtggttgctgtgctgaagaagactata
gagggcgctgatctccccaatctgctgttctatggaccacctggaacaggaaagacctcc
accatcctggctgcagccagggaactttatgggccagagctgtaccgtcagagagtgctg
gagctgaacgcctctgatgagagagggattcaggtggtgagagagaaagtcaagagattt
gcccagctgactgtagcaggccaccgcactgatgggaaaccatgcccaccctttaagatc
atcatcctggatgaggctgactcaatgaccaatgctgctcaggctgctctcagacgcacc
atggagaaggagtcccggaccacccgcttctgtctcatctgcaactacgtcagcaggatt
attgagcccttgacatccagatgctccaaattccgcttcaaacctctagcaaatcaggtc
caagaagagcgcctgctggatatctgtgacaaggagaatctcaagtactcaaaggagggt
attgcagcgttggtgaaggtttcagaaggggatcttagaaaagccataacctttcttcaa
agtgctgcacggctgaacacagataatgagatcacggagagtgcggtcatagagatagct
ggggtggttcctcccaagatgattgacaatttgctcaaaatctgttacaagggaacattt
gaaaaactagagattgctgttgggaacatggtagatgagggctatgctgccacacagatc
atcaaccagctacacgaagccatcatagaggaagagctgaatgacaagcagaagtctgcc
atcacagaaaagatggcagtggtcgacaagtgtttagtggatggtgcagatgagtacctg
cagatgctgagtatgtgttcggtgatcatgcagcaagccactctgagtaactga

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