Oncorhynchus kisutch (coho salmon): 109903067
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Entry
109903067 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein 1 homolog
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04810
Regulation of actin cytoskeleton
oki05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
109903067
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109903067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109903067
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109903067
Factors involved in mRNA localization
Other mRNA localization factors
109903067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Cypovirus_WIV_4
Motif
Other DBs
NCBI-GeneID:
109903067
NCBI-ProteinID:
XP_031693995
Ensembl:
ENSOKIG00005033147
LinkDB
All DBs
Position
LG13:605262..682882
Genome browser
AA seq
1253 aa
AA seq
DB search
MASTVTLEDALSNVDLLEELPLPDQQPCIEPLPCSLMYQPNFNTNFEDRNAFVTGIARYI
EQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVT
KLMNFMYFQRLAIDRFCGEVRRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCS
VKNDHSAYKRAAQFLRKMSEPSSIQESQNLSMFLANHNKITQSLQQQLEVINGHDELLAD
IVNLCVDYYENRMYLTPNEKHMLLKVMGFGLYLMDGSNSNIYKMDAKKRINLTKIDKFFK
QLQVVPLFGDMQIELSRYIKTSAHFEENKNRWSCTSTGSSPQYNICEQMVQIREDHMRFI
SELARYSNSEVVTGSGRQEAHKTDHEYRKLFDLSLQGMQLLSQWSAHVMEVYSWKLVHPT
DKYSNKECPDNAEEYERATRYNYTSEEKFSLVEVMAMIKGLQVLMGRMESVFNHAIRHTI
YSALQDFAQLTLRDPLRQAIKKKKNVVQSVLQAIRKTICDWEAGHEPHNDPALRGEKDPK
GGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSSLEGPTIMDMEKFHRESF
FYTHLLNFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASM
MEYVLYPLDLYNDSAHYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKILAGS
LLLDKRLRADCKNQGANIPWPASNRYETLLKQRHVQLLGRSIDLNRLITQRVSAALYKSL
ELAINRFESEDLTSIVELEGLMNINRMTHKLLSKFLTLDSMDAMFREANHNVSAPYGRIT
LHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKPPNAQPQYLYGSKALNLAYSS
IFGFYRHFVGPPHIKAMCRLLGYQGIAVVMEELLKVVKSLLQGTIMQYVKTLMEVMPKIC
RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNALLFCLLSEQSLSQEEVC
DLLHAAPFQNILPRVHVKEGERLDAKMKRLEAKYTALHLVPLIERLGTPQQIAIAREGDL
LTKERLCCGLSMFEVILTRVRGFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCI
PVGAHEFTVEQCFGDGLHWAGCMIISLLGQQRRFDILDFSYHLLKVQKHDGKDEIIKSVP
LKKMVDRIRKFQVLNDEIFAILNKYLKSGDGENMPVEHVRCFQPPIHQSLASN
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacggtgaccctggaggatgctctgtccaatgtggaccttctggaggagctg
cctctcccagaccagcagccctgcatcgagcccctgccctgctccctcatgtaccagccc
aacttcaacaccaactttgaggaccgtaatgcctttgtgacggggatcgccagatatatc
gagcaggccaccgtccactctagcatgaatgagatgctggaggagggccaggagtatgct
gtgatgctgtacacgtggaggagctgctctcgcgctatcccacaggtgaagtgtaatgag
cagcccaacagagtggagatctatgagaagacagtggaggtgctggagcctgaggtcacc
aagctcatgaactttatgtacttccagcgattggctatagaccggttctgtggggaggtg
cgtcgtctctgccacgctgagaggaggaaggactttgtctccgaggcctacctcctgacc
ttggggaagttcatcaacatgttcgctgtgctggatgaactcaagaacatgaagtgtagc
gtcaagaacgaccactccgcatacaaacgagctgcccagttcctcaggaagatgtcagaa
ccctcgtccatccaggagtctcagaacctctccatgtttctggccaaccacaacaagatc
actcagtctttgcagcagcagttggaggtgattaacggccacgatgagctgctggctgac
atagtcaacctgtgtgttgattactatgagaacaggatgtacctgacccccaacgagaaa
cacatgctgctcaaggtgatggggtttggtctatacctgatggatggcagtaacagcaac
atctacaaaatggacgccaagaagaggatcaacctgacaaagattgacaagttcttcaag
cagctgcaggtggtgcctctgtttggtgacatgcagattgagctgtccaggtacatcaag
acaagcgcacactttgaagagaacaagaacaggtggtcatgtacctcaacaggcagcagt
cctcagtataatatctgtgagcagatggttcagatcagggaagaccacatgaggttcatc
tctgagctggctcgctacagcaacagtgaggtggtgacggggtccggtcgtcaggaggcc
cacaagacagaccatgagtacaggaagctgtttgacctgtctctgcaggggatgcagcta
ctgtcccagtggagcgcacacgtcatggaagtgtactcatggaagctggttcatccaaca
gataagtactcgaacaaggagtgtcctgacaacgcggaggagtatgaacgagctacacga
tacaactacaccagcgaggagaagttctccctggtagaggtgatggccatgataaagggt
ttacaggttctgatgggtcgtatggagtcggtgtttaaccacgctatccgccacaccatc
tactcggccctgcaggacttcgcccagctcaccctgagagacccgctacggcaggccatc
aagaagaagaagaacgtggtgcagagtgtcctgcaggccatcaggaagaccatctgtgat
tgggaggcaggacatgagcctcacaatgaccctgccctgcgaggagagaaagaccccaag
ggaggctttgacatcaaggttcctcgccgcgctgtcggcccttccagcacacagctgtac
atggttcgtaccatgctggagtctctgatagctgataagagtggttctaagaagaccctc
cgcagcagtctggagggacccaccatcatggacatggagaagttccacagagagtccttc
ttctatactcacctgctcaacttcagcgagaccctacagcagtgctgtgacctgtctcag
ctgtggttcagagagttcttcctggagctgaccatggggcgcaggatccagttccccatc
gagatgtccatgccctggatcctcacagaccacatactggagaccaaggaggcctctatg
atggagtatgtgctgtatcctctggacctctataatgacagtgcccactacgccctgacc
aagttcaagaagcagttcctctacgatgagatagaagcagaggtcaacctgtgtttcgat
cagtttgtctacaagctggctgatcagatatttgcctactacaagattctagctggaagt
ctgctgctggacaagcgcctgagagcggactgtaagaaccagggagctaacatcccctgg
cccgcgtccaaccgctacgagacactgctgaaacaacgccacgttcagctgctgggtcgt
tccatagacctgaaccgtctgatcacccagagagtgtctgctgctctctacaagtctctg
gagctggccatcaaccgctttgagagtgaggacctcacatccatcgtggaactagaaggt
ctgatgaacatcaaccgtatgacccacaagctgctgtctaagttcctgacgctggacagt
atggacgccatgttccgggaggccaatcacaatgtctccgccccctacggacgcatcaca
ctccatgtcttctgggaactcaactacgatttcctccccaactactgctacaacggatct
actaacaggttcgtccgcacggtcctgccgttctcacaggagttccagagggacaagcca
cccaacgcccagccccagtacctgtacgggtcaaaggctctgaacctggcgtacagcagt
atctttggtttctacaggcactttgttggtcctcctcacatcaaggccatgtgtcgtctg
ctggggtaccagggcatcgctgtggtcatggaggagctgctgaaagtggtcaagagcctg
ctccagggcaccatcatgcagtatgtgaagaccctgatggaggtgatgcctaagatctgc
cgtctccctcgccacgagtacggctcgccgggtatcctggagtttttccaccaccagctg
aaggacatagtggagtacgccgagttgaagactgtctgtttccagaacctcagagaagtc
ggcaatgctctcctcttctgtctgctcagcgaacagagcctgtcgcaggaggaagtttgt
gacctgcttcatgccgcaccgttccagaacattctgcccagggtccatgtcaaagagggt
gagcgtcttgatgccaagatgaaacgcctggaggctaagtacacagccctgcacctggtt
cctctgatagaacgcctgggaaccccacagcaaatagccatagctcgtgaaggtgacctg
ctgaccaaagagcgtctgtgctgtggcctgtccatgttcgaggtcatcctgactcgcgtc
cgcggtttcctggacgaccccatctggcgcggcccgttgcccagcaacggcgtgatgcac
gtggacgagtgtgtggagtttcaccggctgtggagcgccatgcagtttgtttactgcatc
cctgtaggagcacacgagttcaccgtggagcagtgtttcggggacggtctccactgggct
gggtgtatgatcatctccctactgggtcaacagagacgctttgacatcctggacttcagc
tatcacctgctgaaggtgcagaaacacgatggaaaggatgagatcatcaagagtgtgcct
cttaaaaagatggtggacagaatccgcaagttccaggtcctcaacgacgagatctttgcc
atcctgaacaagtacctgaagtcaggtgatggagagaacatgccagtggagcacgtccgg
tgtttccagcctcctatccaccaatccctggccagcaactga
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integrated database retrieval system
