Oncorhynchus kisutch (coho salmon): 109903380
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Entry
109903380 CDS
T09179
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04518
Integrin signaling
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109903380
04518 Integrin signaling
109903380
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109903380
09142 Cell motility
04820 Cytoskeleton in muscle cells
109903380
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109903380
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109903380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
109903380
NCBI-ProteinID:
XP_020355638
Ensembl:
ENSOKIG00005016895
LinkDB
All DBs
Position
LG14:72828471..72853117
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AA seq
1356 aa
AA seq
DB search
MLSFVDNRILLLLAVTSLLASCQSGGLKGPRGAKGPRGDRGPQGPNGRDGKAGLPGIAGP
PGPPGLGGNFAAQFDGGKGSDPGPGPMGLMGSRGPNGPPGSPGPQGFTGHAGEPGEPGQT
GSIGARGPTGSAGKPGEDGNNGRPGKPGDRGGPGTQGARGFPGTPGLPGMKGHRGYNGLD
GRKGESGTAGAKGETGAHGANGTPGPAGSRGLNGERGRAGPAGPAGARGADGSTGPAGPA
GPLGAAGPPGFPGAPGPKGEIGGAGSNGPSGPQGGRGEPGINGAVGPVGPVGNPGNNGIN
GAKGAAGLPGVAGAPGFPGPRGGPGPQGPQGSTGARGLGGDPGPSGQKGDSGAKGEPGHS
GVQGAAGPAGEEGKRGSTGEAGATGPAGLRGARGGAGTRGLPGLEGRGGPIGMPGARGAT
GPGGIRGAPGDAGRAGESGLTGARGLPGNSGQGGPPGKEGPSGAAGLDGRTGPPGPTGPR
GQPGNIGFPGPKGPGGEAGKGGDKGPTGATGLRGGPGADGNNGAPGPAGVVGNAGEKGEQ
GPSGAPGFQGLPGPAGPAGEAGKAGNQGMPGDQGLPGPAGVKGERGNSGPAGSAGSQGAI
GARGPAGTPGPDGGKGEPGSVGIVGAAGHQGPGGMPGERGAGGTPGPKGEKGEGGHRGLE
GNMGRDGARGAAGPSGPPGPSGANGEKGESGSFGPAGPAGLRGPSGERGEGGPAGPPGFA
GPPGSDGQSGPRGEKGPAGGKGDVGPAGPAGPSGQSGPSGASGPAGPPGGRGDAGPSGLT
GFPGAAGRVGGPGPAGIAGPPGSAGPAGKDGPRGLRGDPGPGGPQGEQGVVGPAGITGDK
GPSGESGPPGAPGTAGPQGVLGPSGFVGLPGSRGDKGLPGGPGAVGEPGRLGPAGASGPR
GPSGNIGMPGMTGTQGEAGREGNSGNDGPPGRPGAAGFKGDRGEPGSPGALGSSGQPGPN
GPAGSAGRPGNRGESGPTGNGGPVGAAGARGAPGPAGPRGEKGGAGEKGDRGMKGLRGHG
GLQGMPGPNGPSGETGSAGITGPAGPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHL
GPAGPPGSPGLPGPAGPAGGGYDQSGGYDEYRADQPSLRAKDYEVDATIKSLNSQIENLL
TPEGSKKNPARTCRDIRLSHPEWSSGFYWIDPNQGCIADAIKAYCDFSTGHTCIHPHPES
IARKNWYRSSENKKHVWFGETINGGTEFAYNDETLSPQSMATQLAFMRLLANQATQNITY
HCKNSVAYMDGENGNLKKAVLLQGSNDVELRAEGNSRFTFNVLEDGCTRHTGQWSKTVIE
YRTNKPSRLPILDIAPLDIGEADQEFGLDIGPVCFK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggataaccggattctgttgctgcttgcagtaacttcattgctagca
tcatgccaatcggggggactcaagggcccaagaggagctaaggggcctcgaggtgacagg
ggtccccaaggtcctaatggaagagatggtaaagctggactccccggcattgccggcccc
cctggtccccctggacttggaggaaactttgctgctcagtttgatggaggaaagggcagt
gaccccggacctggaccaatgggtttaatgggatctagaggacccaacggacctcccgga
tcccctggaccccaaggattcacaggacacgctggagagcctggagagcccggacagact
ggctccattggtgctcgtggacccactggatccgctggcaaacctggtgaggatggtaac
aacggcagacctggcaagcctggtgacagaggtggccccggaactcagggtgctcgtgga
ttccccggaactccaggacttcctggaatgaagggacacagaggttacaatggtctggat
ggacgcaagggagagtctggtaccgctggtgccaagggtgagacaggtgcccatggagct
aacggaacccccggaccagctggttctcgtggtctgaatggtgagagagggcgtgccggc
cctgctggaccagctggtgcccgtggtgctgatggaagcactggacccgccggccctgct
ggtcctcttggagcagctggcccccctggtttccctggtgcccctggccccaagggagag
attggaggtgctggatccaatggcccatccggacctcagggaggcagaggagagcccggt
atcaatggagctgttggccccgtcggtcccgttggtaaccctggtaacaatggtatcaac
ggtgccaagggagctgctggtctccccggtgttgctggagcccctggtttccctggccca
agaggaggtcccggcccccagggcccccaaggatccactggagctagaggccttggtggt
gaccctggaccctctggacaaaagggagattctggtgctaagggagagcctggtcactct
ggtgtccagggtgccgctggtcccgctggtgaggagggcaagagaggctcaactggcgag
gctggtgccaccgggcccgctggtctgcgtggagctagaggaggtgctggaactcgtggt
ctgcctggtctggagggaagaggtggtcccattggtatgcccggagctcgtggagccacc
ggccctggtggtatccgtggagcccctggtgatgccggtcgtgctggcgagtctggtctg
actggagccagaggcctccctggaaactctggacagggtggacccccaggcaaagaaggc
ccatctggtgctgctggtctggatggccgcactggtccccctggcccaactggacccaga
ggccagcccggtaacatcggattccccggccccaagggacctggaggtgaggctggcaag
ggtggtgataagggacctactggtgcaactggtctgagaggcggccccggtgctgatggc
aacaatggagctcccggcccagctggagtcgttggtaacgctggtgagaagggagagcag
ggaccctctggtgcaccaggtttccagggtctacccggccctgctggacctgccggtgag
gcaggcaaagctggcaaccaaggtatgcccggagaccagggactcccaggacccgctggt
gtcaagggagagcgtggaaactctggtcctgctggttctgccggatctcagggagccatc
ggtgctcgtggacctgctggaactcctggccccgatggtggcaagggagagcctggttct
gtcggcattgttggtgccgccggacaccaaggacccggtggtatgcccggtgagcgcggt
gctggtggtactcccggacccaagggtgagaagggtgagggcggacacagaggacttgag
ggtaacatgggaagagacggcgcccgtggtgccgccggaccaagtggaccccctggacct
tccggtgctaatggtgaaaagggtgagtctggctccttcggccctgccggacctgctggt
cttcgtggacccagtggagagcgtggagagggtggacctgctgggcctcccggcttcgcc
ggaccccctggttctgatggtcagtctggccctagaggagagaagggacccgctggtgga
aagggagatgtcggccccgccggccctgctggaccttctggccaatctggaccttctggt
gctagcggacccgctggtcctcctggtggtcgtggtgatgctggaccttctggtctgacc
ggtttccctggtgctgccggtagagttggaggccccggtcccgctggtattgctgggccc
cctggctccgctggtcccgctggcaaggatggccctcgtggtctccgtggtgatcctggc
cccggtggacctcagggagagcagggagttgttggacccgctggtatcactggagacaag
ggacccagtggagagagcggtcctcccggtgctcctggtaccgctggaccccaaggtgtg
ctcggaccctctggcttcgttggtctgcctggttcccgtggtgacaagggtcttcctggc
ggtcctggtgctgtgggtgagcctggtagacttggacccgctggtgcctctggaccccgt
ggtccctctggtaacattggcatgcccggtatgactggtactcagggagaagctggacgt
gagggtaactctggcaacgatggacctcccggtcgtcccggagctgctggcttcaagggt
gaccgtggtgagcctggttctcctggagcccttggaagctctggtcaacctggacccaac
ggacccgctggctccgctggcagacctggaaaccgtggagagtctggccccactggaaat
ggtggtcccgtcggtgctgctggtgcccgtggtgcccccggccccgctggtccccgtgga
gagaagggtggcgctggagagaagggagacagaggcatgaagggtctgcgtggacatggt
ggtctccagggaatgcccggacctaatggaccatctggtgagactggctctgctggtatc
actggacctgctggacccagaggccccgccggaccccatggtccccctggtaaggatggt
agagctggaggtcatggtgctatcggacctgttggacaccgtggttcccctggacatctt
ggacctgctggtccccccggctctcctggtcttcccggacccgcaggtcccgctggtggt
ggatacgaccagtctggtggatacgatgagtacagagccgaccagccctctctcagggcc
aaggactacgaggtggacgccaccatcaagtccctgaactcccagatcgagaacctgctc
acccccgagggctccaagaagaaccccgcccgtacctgcagagacatccgcctcagccac
cccgaatggagcagcggtttctactggatcgaccccaaccagggctgcatcgctgacgcc
atcaaggcctactgcgacttctccaccggacacacctgcatccaccctcaccccgagagc
atcgcccgcaagaactggtacaggagctctgagaacaagaagcacgtctggttcggcgag
accattaacggtggtactgagtttgcttacaacgacgagaccctgagccctcagagcatg
gccacacaactggccttcatgcgtctcctggccaaccaggctacccagaacatcacatac
cactgcaagaacagcgtggcgtacatggacggagagaacggcaacctgaagaaggctgtg
ctcctgcagggttccaacgacgtggagctgagggccgagggcaacagccgcttcactttc
aacgttctggaggatggctgcactagacacactggccaatggagcaagacagtcattgaa
tacagaacaaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt
gaagctgatcaagagtttggtttggacattggcccagtctgtttcaaataa
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