Oncorhynchus kisutch (coho salmon): 109903578
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Entry
109903578 CDS
T09179
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oki00535
]
109903578
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Others
109903578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_3
DUF4992
DUF4959
Motif
Other DBs
NCBI-GeneID:
109903578
NCBI-ProteinID:
XP_031644465
Ensembl:
ENSOKIG00005005535
LinkDB
All DBs
Position
LG14:complement(56545819..56673092)
Genome browser
AA seq
1883 aa
AA seq
DB search
MQAIGLKMWVWSPLLCLVLISLLPVQAQGQVATPRRLRFKVLSATQLHVSWKEPKGEFES
YRFIYSTKSDAEETELEMTKKEAKVIIDFDPRKLYTVKVTAVKGAQESKPLQGTFKKPDN
ENVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVSAFHVEFDKTRIGLAQYSGDPRMEWHLNTFTTKEAVIDAVKNLPYKGGNTLTGL
ALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVRPPAQSLREAGIELFAIGVKNADE
KELKAIGSPPEETHVYNVADFSVMSSIVERLTRTVCDRVEQLDKAIKGDRGPEVTMASPR
GLVTSEVTARSFRVSWTHAPGTVEKYRVVYYPASGGQPEEKVVQGTVDTVVLNYLLSLTE
YQVAVFAIYASSASEALRGSATTLALPTVNNLELFDITHNTMRARWRVAEGASGFMILYA
PLTEGDDADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLTP
ARNLRFSNVDHSSARLNWEATSKKASGYRIMYVKTNGVQTNEMDVGRITTLLLRNLTSLT
EYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLRSSEVSTESFRVTWEHSAQDVVLYRLT
WTPIRGGDTKEMLVNGKMNSHLLTGLRPITEYEVSLIAVFRNEEESNAVTLTESTVARTT
TTTKATTTTTTTQATTIAVMRLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAYVTARG
DRAEETKMVPGGQNSLLLQPLLSDMEYKVTVTPVYADGDGPGVSRMGRTLPLSAPRNLRV
SEEWYNRFRITWDTPQSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSGTEYGV
RVIASYTTGSSETLTGKARTLYLGVTNLNTYQVRMTSVCAQWGAHRHATLYRVVIESLLN
GYKQEARLGGGTTQHCFNDLTANTQYKISVYAHLQDTEGPAVSTTEKTFPVPTPAPTRPP
TTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLYSTTGALDIIGPDGTQ
VAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTVGGGIR
RGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSERHVFF
VDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGHVSGVSM
EPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFALWEILNK
DNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFDGPEIKKLFYGSFHKLHMAISKTSAKA
VIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDSSAPFQLQAFDIVCSTSWASRDK
CCELPGLRKEEDCPAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGDRGEPGAVGPIGPV
GDAGSPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGVAGAPGIQGIPGSPGSSGRAGQTG
TRGLPGKDGPQGRTGPPGTIGTPGASGSPGSSGPPGSLGNQGPPGPAGNKGEKGERGDLQ
SQASVQAIARQVCEQLIQSHMARYSSILNHIPSASVSVRTVPGPPGEPGRQGGPGPQGEQ
GPPGRPGFPGSNGENGQAGARGLSGEKGDKGSPGAGVQGPRGPVGPPGPTGQGRTGSQGP
SGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGIGGDTSDRHNLPLVQLPP
NTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPGLTQGDEVLRSPGIHRSY
RSLADKNDKKEEEGPGERKMVVP
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctataggactgaagatgtgggtatggagtcctctactctgtctggttcttatc
tctctcttacctgtgcaagctcagggtcaagttgccaccccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagaaccgaaaggagaatttgaaagc
tacagatttatttatagcacaaagtcagatgcagaggagactgaactagagatgacaaaa
aaggaagccaaagtgatcatagactttgaccccagaaagttgtacacagtcaaggtcact
gctgtgaaaggtgctcaggagagcaagccacttcaaggaacatttaagaagcctgacaat
gagaacgtacagccccagaatgtacgacccaaaaaccagaaagacaccagtgtcactgag
gagaacaatgagatatctgaagagcagttcatgtgtaagaccccggccattgcagatatt
gtgatcctggtggacggatcatggagtatcggacggataaacttccgtctggtccgcatg
ttcctggagaatctggttagcgccttccatgtggagtttgacaagacacggataggtctg
gcccagtacagtggtgaccccaggatggagtggcacctgaacactttcaccaccaaagaa
gcagtcatcgacgctgtgaagaacctgccctacaaaggagggaacacattgacgggtctt
gcattgacgtacatcctggagaacagttataaacctgagtccggatccagggccggcgtt
cccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtcagacccccggct
cagagtctgagagaggcgggaatagagctgtttgccattggtgtgaagaacgccgatgag
aaagagctgaaggccatcggctcgcctccagaggagacgcatgtctacaacgtggccgac
ttcagcgtcatgagctctatcgtggagcgtctgaccaggaccgtctgtgaccgggtcgaa
cagctcgacaaggccatcaaaggcgacagaggcccagaagtcaccatggcctctcccaga
ggcctggtgacctcagaggtgacagccaggagtttccgggtgtcgtggacccacgcccca
gggacggtggagaagtaccgggtggtgtactaccctgccagcgggggacagcccgaggag
aaggtagtgcagggcacagtggacacagtggtgctcaactacctcctctccctgactgag
taccaggtggccgtgttcgccatctacgccagctcagctagcgaggccctccgaggcagc
gctaccacattggccctgcccacggtgaacaacctggagctgtttgacatcacccacaac
accatgagggcccgctggagggtcgcagagggggcttctggcttcatgatcctctatgcc
ccgctgaccgagggagacgacgccgatgagaaggaggtgaaagtggctgagacggtgaac
gaagtggaactggagaacctgaccccagacacagagtacacagtgacggtgtacgccatg
tacggagaggaggccagtgaccctatgaccagtcaggagaccacgctacccctgaccccg
gcgcggaacctgcgcttctccaacgtcgaccacagctctgccagactcaactgggaggcg
acgtccaagaaggccagcggttaccgcatcatgtacgtcaagaccaatggagtgcagacc
aatgagatggacgttggccgtatcaccaccctgttgctaaggaacctgacgtcattgacc
gagtacacggtggccatctttgctatctatgacgagggccaggcagagcccttgactgac
agcttcactactaagacggtcccagagcctctgaacctgaggagcagtgaagtctccaca
gaaagcttcagggtcacctgggaacactcagcccaagatgtggttctttacagactcaca
tggacccccatcagaggaggagacactaaagagatgctagtgaacggtaaaatgaatagc
cacctgctgactggactgaggcccattactgagtacgaggtctctctgattgctgtcttc
agaaacgaggaagaaagcaacgccgtgaccctcacagagtcaacagtggcaagaacaacg
actaccacaaaagctactactaccacaactaccacacaagctaccaccatagcagttatg
cgtctgggtgtgaggaacctcctgctcagcgatcacaccaccttcagcatggaggtgtcc
tgggagctgcaggaccgcaacgtgcgtcagtaccgcgtcgcctatgtcaccgccaggggc
gatcgtgccgaggagacgaaaatggtcccaggtggtcagaacagcctcctgctgcagcca
ctgctgtctgacatggagtacaaggtgacggtcaccccggtctacgctgacggagacggc
cccggtgttagccgcatgggacgcaccttgccactgtctgctcctaggaacctgagagtg
tcggaggaatggtacaaccgcttccgtatcacctgggacacgccccaatcccccactatg
ggctatagagtcgtctacaaacccatctctgctccgggacctgctttggagacctttgtg
ggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtactgagtacggcgtc
agggtcatcgcctcctacactaccggctccagcgagaccctcaccggcaaagccaggaca
ttgtaccttggagtgaccaatctgaacacctaccaggtgaggatgaccagcgtgtgtgcc
cagtggggtgcccaccgccacgccactctgtaccgtgtggtcatcgagtcgctgctcaat
ggatataagcaggaggcaagactgggaggaggaaccacccagcactgcttcaatgacctg
acagctaacacgcagtacaagatcagtgtgtacgcccatctccaggatacagagggacct
gcagtctccaccacagagaagaccttccctgttcccaccccggcacccaccagaccaccc
accacgaccgctcctcccagtataccctcagtcaaggaagtttgcaaggcggccaaggca
gacctggcatttctagtggacggctcctggagcatcggggatgacaacttcctgaaaatc
atccgcttcctgtacagcaccacaggagccctcgacatcattggaccagatggtactcag
gtggccattgtccagttcagtgacgatgccagaaccgagttcaaacttaactcgtacgac
aataaggagaggctgctagaggccattaaccgcatctcctataagggagggaacaccaag
acagggctagccatccggcatgtgaaagacaccatcttcacagtgggaggaggtatccgg
aggggcatccccaaagtactggtggtgttgactgacgggcgctctcaggacgatgtcaac
aaggtctccaaagagatgcagatggaagggtacattgtttttgccattggttttgcggat
gcggactacggggagctggtgagcatcgccagcaagcctagcgagagacacgttttcttt
gtggatgatttagacgccttcaagaaaattgaggaaaagctggtcacttttgtttgtgag
gctgccactgccacttgtccttcggtggcgatgagtggcagtaccttgccaggtttcagg
atgatggagatgtttggcctggtggagggtctgtatggacatgtatcaggagtgtccatg
gagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaactccctccttgcc
cagcccaccaagtttatccaccccgagggtttgccctctgattacaccatcactatgctg
ttccgcctgctgccggaaacgcccaaggagccctttgcattgtgggagatcctcaacaag
gacaacgagcccctggtgggcgtcatcctggacaacggtggcaagaccctcaccttcttc
aaccatgactacaaaggacagtttcagactgtgaccttcgatggacctgagatcaagaag
ctcttctacggcagtttccacaagctgcacatggctattagcaagaccagcgccaaggct
gtcattgactgtaagctagtaggggagaaggccatcaacgcggcgggcaacatcaccacg
gatggcctggaggtgctgggacgcatggtgcgctccagggggaagaaggacagctctgca
ccgttccaactgcaggcgtttgacatcgtctgcagcacgtcctgggccagccgagacaag
tgctgtgagcttcctggtttgaggaaggaggaggactgtcctgccatgccgagggcctgc
acctgcagccaggaaagcaaaggtccccctggccccactggaccccctggaggacctggg
atcagaggagggagaggggaccgtggagaaccaggagctgtgggaccgataggtccagtt
ggggacgctggttctcctgggctgcaggggcctcctggaccacaggggcccagcggacgt
accatcatgggccctccgggtggtccaggagaaagaggtgagaagggtgtagctggtgct
ccaggaatacagggcattcctggatctcctgggtcatcaggtcgagcgggacaaacagga
acaaggggacttcctggtaaagatggaccccaggggcgaacaggacctccagggactata
ggcactccaggagcttctgggtcaccagggtcaagtggacctccagggtcactgggaaac
cagggacctcctggtcccgccggaaacaaaggagagaagggagaaagaggtgacctgcaa
tcccaggcatcggtccaagcaatcgcccggcaggtctgtgaacaactgatacagagtcac
atggctcgctacagctccatccttaaccacatccccagcgcatccgtctccgtccgcacc
gttccaggtcccccaggagagcctgggcggcagggcggcccaggaccacagggagagcag
gggcccccgggcagaccagggttccccgggtccaacggagaaaatggacaagcaggagcc
agaggtttgtcaggagagaagggtgacaagggaagcccaggcgcaggagtccagggtccc
agaggccctgtcgggcccccaggaccaacgggtcagggccggacaggtagccagggtcca
tctggtcggccggggaaccctggaacccctgggcggccgggtatccctggaccagtgggg
tcggctggacctcctggatactgtgaccagaactcctgtgtgggctacaacgtaggagag
ggtggcatcggtggtgacacatctgaccgccacaatcttcccttagtccaattgcccccc
aacacctaccagaactatgacgaggtggaggaggaggacccctataggtatggcgagggg
ggctacccctccgagtactatcagcccaactacccggcgcctcgaccggtcgtgcccgaa
gatccaggcctcacccagggcgacgaggtgctgaggtcccccgggatccaccgctcctac
aggagcctagctgacaagaatgataagaaagaagaagaggggccaggggagaggaagatg
gttgtcccatga
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