Oncorhynchus kisutch (coho salmon): 109903641
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Entry
109903641 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109903641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109903641
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109903641
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109903641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Tra1_central
Motif
Other DBs
NCBI-GeneID:
109903641
NCBI-ProteinID:
XP_020356060
Ensembl:
ENSOKIG00005015368
LinkDB
All DBs
Position
LG14:54539597..54558951
Genome browser
AA seq
1015 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEVNRLFATPYGYLLHIFLSS
FSPCFLPYYLNLFSSDAVILTLKFISYPVCLSLFSRHAALPNAPKCKKQDRIEELKHFIE
KHRYHIRMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEEL
PTSPSVSPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSSATYT
TENSEDDKKRGRSTDSEVGQLCCTRSGFEVMPFIKFQSPIKNGNPSSSLSSSSSSSSSSS
SSASSGASSSSLATIAGVGLPVTGGNSLLGNMGGLLSNSGSYRDATQLQQHYHTQQARNS
VISSNAPSNSNPSNNLLLPSPSASSPANSSTTLPPLTPNTQLHAPSRPPPSSSLGLGLGL
GLGKGGITGSPAVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGK
SVSSSSPNSGTVGPMSGNTVSDRSTGLLGSAPCAIGVSGGILSLSGLGSGQLAVQGPPLV
ASSPIGGLSPGSSLGAIGSIGGNSGSGAPSSSVGMGGGSTAITRPPSGQKQNGSTSYSAV
VADSTPDSALNSASQLQSSQPSSLTSTTNQPKDSGPSLLGPMILPTSSPSPSYSESKLPG
SGMLNGPLSYTQTSESKPQEPLSTLKSMAERAALGSGMEGEMLPLHLTTDIFPSTTLPPG
PPSAPQQPSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYL
MRNPCPTLPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRF
HTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagcagacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcatactcgaaggaggggctgggcttggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagtgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gaggtcaatcgtctttttgccacgccatatggctatcttctccatatcttcctctcctcc
ttctctccctgtttccttccgtactacttaaatcttttctcatcagatgctgtcattcta
actcttaaattcatctcttatcctgtatgtctctctttattttcccggcacgctgcatta
cccaatgcaccaaaatgtaaaaaacaggaccgcatcgaagagctgaagcacttcatcgag
aaacaccggtaccacatccggatgctggagaccatcctgcgcatgctggacaacgacacc
ttgccggtggactccattcgcaagatcaaggacgacgtggagtactacatggactcgtcg
caggaccccgacttcgaggaaaacgagttcctctacgacgacctggatctggaggagctc
cctacctctccctctgtctccccccatccatctcttgtctctctagccgggtcgctggtg
gccacgtccccgccgggccaatcgctcctggacgacgatctcttccatcagatctccagc
ggcacgcctacctccaccacttcctcctcgcccatccctccctcgtccgcaacttacact
acggagaactctgaagatgacaagaaaaggggacgttcgacagacagtgaagtcggtcag
ctgtgctgcaccaggagtggttttgaagtaatgccttttataaaatttcagtcgcctatc
aagaacggcaacccctcttcgtcgttgtcctcctcctcctcttcatcctcctcctcttca
tcctctgcctcctcgggagcctcctcatcctcgctggcgaccatcgccggggttggcctg
ccggtcactgggggcaacagcctcctgggcaacatgggaggtctcctctccaactctggc
agctacagagatgctacccaactgcagcagcattaccatacccagcaggccagaaactca
gtcatctcctccaacgccccctccaactccaacccttcgaacaacctcctcctccccagc
ccctccgcttcctcacccgccaactctagcacaaccctccccccactcacgcccaacacc
cagttgcatgctccgtcaaggccgccaccgtcctccagcttggggcttgggttgggcttg
ggccttggtaaaggcggcattacggggtcaccggccgtcagccagatgtcgggccttggc
ttgtcggggatgccggcatccctaaacaccatggccgggctcctggcgggctcaacttcg
gccccctacgccacggcagcagcaggctccggaaccatcggaagccccctagcagggaaa
agcgtcagcagtagcagccctaactccggcacagtgggaccgatgagcgggaacactgtc
agcgatagatccacgggcctgttgggctctgcgccctgtgcaattggtgtcagcggtggg
atcctcagcctaagcggccttggctcagggcagttggcggtccagggccctcccctggtg
gcctccagtcccataggaggcctgtcccctggaagcagcctgggagccataggaagcatt
ggagggaactctggttcaggcgcgccaagcagcagcgtgggcatgggaggaggaagcacg
gcgatcacaaggccacccagtggacagaagcagaatggtagcactagttacagtgctgta
gtagcagacagcacacccgattccgccctcaatagtgccagccaattacaaagcagccaa
ccctcgtctttgacctccaccaccaatcagcctaaagacagtggccccagcctcttaggg
cccatgattcttcccaccagctctccctcgccctcctacagcgagagtaaacttccaggc
agcggtatgctcaacgggccactctcctacacacagacctctgaaagcaagccccaggag
cctctgagcactctaaagtctatggcagaacgagcggcactgggctcaggaatggaggga
gagatgcttcctctgcacctcaccacagacattttccccagcactacattgcccccgggg
cctccctcggccccccagcagccctcgctttcagaggtcagcatccccccatcgctgggc
gtgtgcccactcgggcctgtgcccctgtccaaagaccagctgtaccagcaggccatgcag
gaatcggcatggacgcacatgccccacccctctgactcggagaggatcaggcagtacctg
atgaggaacccatgtcccaccctgcctttccaccaccaggtgccacccccccactccgac
tctgtagagttctaccagagactgtccacggagacactgttcttcatcttctactaccta
gagggcaccaaggcccagtatctggcagccaaggccttgaagaagcagtcgtggcggttc
cacaccaagtacatgatgtggttccagaggcacgaggagcccaagaccatcacagatgag
tttgagcaggggacgtacatttactttgactacgagaagtggggacaacggaagaaggag
ggattcacgtttgagtacaggtaccttgaggaccgagacctccagtga
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