Oncorhynchus kisutch (coho salmon): 109903782
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Entry
109903782 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109903782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109903782
03036 Chromosome and associated proteins [BR:
oki03036
]
109903782
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109903782
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109903782
mRNA degradation factors
5'-3' decay
Decapping complex
109903782
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109903782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109903782
NCBI-ProteinID:
XP_020356307
Ensembl:
ENSOKIG00005028344
LinkDB
All DBs
Position
LG14:complement(48976731..49029037)
Genome browser
AA seq
490 aa
AA seq
DB search
MASARTENLGPICMGLNKQNGQLRGVPKPASPQSGPLVLGSLLSKAVGAPQKAGASLEGT
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLGKGRQILLYSATFPISVQKFMAKHLHKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHATNPNCEEGL
KETGRQQVEP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgcaagaacggagaaccttggccctatctgcatgggactgaacaagcagaac
gggcagcttaggggggtgcctaaaccggcctctcctcaatcaggacccctcgtcctgggc
tctctgttaagcaaggctgtaggtgcaccccagaaagcaggtgcttccctggagggaact
ggcattagatttggagatgactggaaaaagagcctacagctccctcccaaagacactaga
gtcagaacctctgatgtaacatccactaagggaaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatttttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccttgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggattat
atacaggctattgtgatggtgcccactcgtgagctggccctgcaggtgagccagatcagt
atccagatcagcaagcacctgggcggagtgaaagtcatggccaccacgggtggtaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcatagccacacctggc
aggatcttggacttgataaagaagggcgtggccaaagtggatagagttcagatgatggtg
atggatgaggcggacaagctgctgtctcaggactttgtggtgctcatcgaggatatcatc
agcttcctgggcaagggccgtcagatcctgctgtactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcataagccctatgagatcaacctgatggaggaactg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaggtccactgt
ctcaacacactcttctccaggttgcagatcaatcagtccatcatcttctgtaactccacc
cagagagttgagctgctggctaagaagatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaatcgtgtgttccatgacttcagaaatggactc
tgcagaaatcttgtctgcactgatctcttcaccagaggtattgacatccaggccgtcaat
gtcgtcatcaacttcgacttccccaagaatgctgagacatacctgcatcgcatcggacga
tcagggaggtttggccacctgggcctggccatcaacctgatcacctctgaagaccgcttc
aatctgaagtccatcgaggaccagttggtcaccgacatcaagcctatccctggcagcatc
gacaagagcctgtacgtggcagaattccacgccaccaaccccaattgcgaggaggggctg
aaggagactggccgccaacaggtggagccctag
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