Oncorhynchus kisutch (coho salmon): 109903937
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Entry
109903937 CDS
T09179
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X2
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109903937 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109903937 (arid1b)
03021 Transcription machinery [BR:
oki03021
]
109903937 (arid1b)
03036 Chromosome and associated proteins [BR:
oki03036
]
109903937 (arid1b)
Transcription factors [BR:
oki03000
]
Eukaryotic type
Helix-turn-helix
ARID
109903937 (arid1b)
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109903937 (arid1b)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109903937 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
109903937
NCBI-ProteinID:
XP_020356549
LinkDB
All DBs
Position
LG14:33175460..33406105
Genome browser
AA seq
2365 aa
AA seq
DB search
MAAQVASAPTTTNNKKNKLSGSLGQEIHSGKSGGGTISRSGAMLGAGDGTNTMNNVDHHH
QNELNMVNSTSPNNNSDTREKESGNTITSSNSTTSLEGMETGLIANHKQNNVSGDPPQHL
TPPQQQSQFNPFPQHQQRQIQSNNINNSQATRGESENQHHGGKRGVLASQTEQQMLSKGE
GDHTCKPGERMGARYEHANLGPTTDISSQPQSAGGNSAISEFNNYYGTSRVGACYDQHGG
QNTGMGMMHSSGPNNMDPVHNSHEGYHNSQYNHYPGYRQGYGGAGYGMMAPSRQGSNMLI
GPGSNAPASHVKAAMGAASSGSGGSVGGFQRFPGHTQHPSGATPTLNQLLTSPSPMMRGY
GSGYHQDYNSPSAQQQAGIGLGKDMTSQYGSTTHGWPGQQRNHPSMSPGNGGQGISRPQV
ASVDFMAMKRSHLYGMGNNPYSQQQQGGPYPSQPYGSPATHRYPMGMQGRGQAGMGGMQY
PQQQVPPQYGQQGMGGYSQQQQQGTPPGSYFSPPQQNPTAPTQPPYLPPRAPPQQEAPQE
SYRGSTRRQQHVPGNSGKANLEDMGLIPQDRPSSLPDLSGAIDDLPTGTDAGHSSAVSAT
GSTSSQGEQSNPSQSPFSPHASPHLSGRGSGPSPSPVGSPVGSNQSRSGSGPISPVSGPT
TAQGSQMAPQIPVNTSDVPHSPLTQSPMPQERGFMSNMQRNQCGSQFATPPPQSGPSMSP
HPSPGPGPGGQMYPGMGPRPYLQGGSSGPYGPQGSQANQYGPQGNYPRPPNYGGTPSANY
SGPGPGMTNSLGMNASSPMHGQGPGQPMPMGRSLGAGSRPYPNMAPSSPSMPQPAGPGMG
PPSLGNVNRKAQEAAASVMQAAVNSVQSSRPPYVRSPALHTSSGPSPLHPLPTTPTPPPP
PPPPLQPPHPNYNTPHSQQHGQGSYPGPGINQIVPPINQPQGNNSGMGTPQGPPYNMPPS
GPIGMAGDGMVTPVGKQKMDGKEESMPTNEPPRPKDGYSGSQCVSQPTTPGAMPVPSPLS
PSPASLSSYHGDDSDSISSPVWPKTPSSPKPNSSTMTNEQITRLYDMGGEPERRGWVDRY
LSFMEERGTPVPHLPAVGKKPLDLYRLYMVVKEIGGLAMVNKNKKWRELSTSLSVGTSSS
SASSLKKQYIQYLFAYECKVERGEDQPADSNTGTGGDNRKQAKLQPPSPANSGSLQGPQT
PQSSGSSSMAEMSGDLKPPTPASTPQGQVTPIPASRNSVVSVQDPFSEVSDPVFQKRSSL
PPGGPGGPYQQGVNMPPDVMMRMQYEKDPFAGMRKVAGGDSYMPGQMPSGGMQEMYGRPP
SGMGQRSQYPYGPGYDRRPDHVIGMEGSMGTPGSQSNMGPSNSEGSIYSPNRYPSQLRHE
GYGQQYPGMSYGMHPSGMYPQQQGYKRPMEGMYGPPGKRHEGEMYGPPGKRHEGEMYGPP
GKRHEGEMYTMQYGSQQPDMYNQYSTGYSGPERRPMQGQFPYPSPYSRERMQASGQGQHP
QQPMGPQMMAGGPPSNNGVEGPQGPNMWPSRTDMGYPYSNRQGAPSQVPSYGPLGRGEDM
EGRPIQEGQWLGHGGHRQSSYMSGGMTPMSSRQPPSAYQTSPSMANHLPRAPSPGSYQRS
MEARMSPNKAAYMGSMKMPCKPGMPMPGQGSGHPGQVPPNLRRDLNYPLGSVEATMPLLK
PRRKITSKDTGTPEAWRVMMSLKSGLLGESTWALDTVNILLYDDSTVASFTLAQLPGFLE
LIVEYFRRCVMEIFGILEEYEIGTIGQKTLLGPEACNQGEALTSEPEMDCEASQPEPESE
QEVERGEVEKGEVENGEDKPADITEKITVELMSPPSATVPAPEETKEESEAEVKVKKEEG
EKEQEGEKGKEEGEKPTESKKVPAESKEDYPNQSEPRPQQASKYDKFPIKILHKEDLIED
MTEQLAHVTEFTSGLLHWQVGGGDSTAHIQTHFEGRGEQPDRTEGERDECAILNKEQETD
SRTEEKGNRITATIDDILCARLEALSEGHPTHSAPTYPFRLHQGGGHKHITLLEDEPRCL
NEAPLSAASPWQDSLAKRCLCVSNILRSLSFIPGNDSDMSRHPGLVLILGRLLLLHHQHP
ERKRTSPSYQREEVQERGLACSKDEWWWDCLTVLREDTLVTLANISGQLDLSLYPETICL
PILDGLLHWMVCPSAEAQDPFPSAAPHSPLTPQRLVLECLCKLSIQDNNVDLLLATPPFS
RQEKLYATLVRYVGQRKNQVYREMAVATLSNLAQGDSTSARAIAVQKSSVGNLMGFLEDG
VSMAQYQQNPHSLMHMAHHPPMEPPSVNMMCRAAKALLAMAKVEENRPEFVLYEGRLLDI
SISSVLNPGVASIVCEVLFQFVKKL
NT seq
7098 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcagcaccgacgacaactaataacaagaaaaataaattgtct
ggcagtttggggcaagagatacattcggggaaatcgggaggaggaactatatcgagatct
ggagcaatgcttggagctggagatgggactaacacaatgaataatgtagaccatcaccac
caaaacgagctcaacatggtcaattcaacttctccgaataacaattctgacacacgggag
aaggagagtggaaataccataacatcgtcaaattcgacgacctctctggagggaatggag
acgggtttgatagcaaaccataaacagaacaatgtgagtggagatccccctcagcacctc
acgccgccgcaacagcagtcacaatttaacccgtttcctcagcatcagcagcgccagata
caaagtaacaacatcaacaacagccaagcgacaaggggagagagtgagaatcagcaccac
ggagggaagaggggtgttttggcgagccagacagagcagcagatgctgagtaaaggtgaa
ggggatcatacctgtaaaccaggggagcgaatgggtgccaggtatgaacatgccaacttg
ggaccaacgaccgacatcagcagccagccccagagcgcaggagggaacagcgctatttca
gagtttaataactactatggcacttccagagtaggggcctgctatgatcaacatggcgga
caaaacactgggatggggatgatgcactcctcgggacccaacaacatggacccagtgcac
aactcccacgaaggataccacaacagccagtacaaccactaccctggctaccggcagggc
tacggtggagcgggctacggtatgatggcaccgtccagacagggcagtaacatgctgatt
ggccctggcagcaacgctccagctagccatgtcaaggctgctatgggagctgcttcctcc
ggttctggtggaagtgttgggggctttcagagattcccaggacatactcagcatccctcg
ggagccaccccaactctaaaccaactgctgacgtctccaagtccaatgatgcgaggttat
ggcagtggctatcatcaagactataacagtccctctgcacaacaacaagctggcatcggc
ttaggcaaagacatgacttctcagtatggctccacaacccatggctggccagggcaacag
agaaatcacccgtccatgagtcctggaaacggagggcaaggtatcagcagaccacaggtg
gcttccgtggacttcatggctatgaagcgctcccatctctacgggatgggcaacaacccc
tactctcagcagcagcagggcgggccctaccccagccagccatacggatcgcccgctaca
cacagatacccaatgggaatgcaggggaggggccaggcgggcatgggcggcatgcagtac
cctcaacagcaggttcccccccagtacggccagcagggtatgggaggatacagccagcag
cagcagcagggaacacctccgggatcctacttcagccccccccagcagaaccccaccgcc
cccacacagcccccctacctgcctccccgcgccccaccccagcaggaggctccacaggag
agctacagaggcagcaccaggaggcagcagcatgtcccagggaattctgggaaggccaac
cttgaggacatgggtctgatcccgcaggaccgcccctccagcctcccggacctgtctggt
gccatagacgacctccctacagggacggacgctggtcacagttcagccgtcagtgctaca
ggctccaccagtagccagggggagcagagtaacccgtcccagtcacccttctcaccccac
gcatcaccccacctgtctggccgaggcagcggcccatcgccctctcctgttggctccccc
gtgggctccaaccaatcacgctccggctctggcccaatctccccagttagcggcccaacc
acagcacaagggtcccagatggccccccagatccccgtcaacacgtcggatgtccctcac
tcccccttgacgcagtcccccatgcctcaggagaggggctttatgtctaacatgcagaga
aaccagtgtggctcccagtttgcaacaccaccacctcagtcggggccttccatgtcccct
cacccctctcctggtcctggtcctggaggacaaatgtacccagggatggggcccaggccc
tacctccagggtggctccagtggcccctacggaccccagggatcccaggcaaaccagtat
ggaccccaaggtaactacccacgtccacccaactacggtgggacccccagtgccaactac
agcggtcccggccctggcatgaccaacagcctgggtatgaatgccagcagccccatgcat
ggccagggtcccgggcagcccatgcccatgggccgcagtcttggcgcgggcagccgaccc
taccccaacatggcccccagctcccccagtatgccccagccggcaggcccagggatgggc
cctccttcactgggcaacgtcaaccgcaaggcccaggaggcagccgcttccgttatgcag
gccgcagtcaactctgtacagagcagtagacctccctatgtgaggtccccagccctccac
acctcttctggacccagtcccctgcaccctctccccaccacacccacccctcctcctcct
cctcctcctcctctccagcctccacaccccaactacaacacccctcattctcagcaacac
ggacagggcagctacccaggccctggcataaaccagattgtgccccccatcaaccagcca
cagggcaacaactcaggcatgggcacgccacagggtccaccctacaatatgccaccttca
gggcccatcgggatggctggggatgggatggtgactcctgttgggaagcaaaaaatggat
ggcaaggaggagagcatgcccaccaatgaacctcccagacccaaggatggctacagtgga
tcccagtgtgtctcccagcccaccacccctggtgccatgcctgtcccctctcccctgtcc
cccagcccagccagcctgtcctcctaccatggggatgacagtgacagcatcagcagcccc
gtctggccaaagactccctccagccctaagcccaactcttccaccatgactaacgagcaa
atcacacgtctgtatgatatgggtggggagccggagaggcgtggctgggtggaccgctac
ctgtcctttatggaggagaggggtacacctgttccccacctccctgccgtgggcaagaag
cccctggacctctacagactgtacatggtggtcaaggagatagggggcctggccatggtg
aacaagaacaagaagtggcgagagctatccactagtctgagtgttggtacctccagtagc
tccgccagctctctgaagaagcagtacatccagtacctgtttgcctatgagtgtaaggtg
gagcggggagaggaccagccggccgacagcaacactgggactgggggagacaacaggaag
caggccaagttgcagccgccctctcctgctaactcagggtccctgcagggcccccagacc
ccccagtcgtcaggcagcagctccatggcagagatgtcaggtgacctgaaaccccccacc
ccagcctcaaccccccagggccaggtcacccccatcccagccagcaggaacagtgtggtc
agtgtgcaggacccgttctctgaggtgagcgacccggtcttccagaagcgtagctccctc
cccccggggggccctgggggaccgtaccagcagggggtcaacatgccccctgacgtgatg
atgaggatgcagtacgagaaggaccccttcgctggcatgaggaaggtggcaggaggggat
tcctacatgccaggccagatgcccagcggtggcatgcaggagatgtatggcaggcctcca
tcaggcatgggccagcgttcccagtacccatacggaccaggctacgacaggagaccagac
catgtgatagggatggaggggagcatgggcacccccgggagccagagcaacatgggacct
tccaacagcgagggcagcatatactctcccaacagatacccctcccagcttagacatgag
ggttacgggcagcagtaccctggcatgtcatatggaatgcacccctcagggatgtaccca
caacaacagggttacaagcgccccatggagggcatgtacggccccccaggcaagaggcac
gagggggagatgtacggccccccaggcaagaggcacgagggggagatgtacggcccccca
ggcaagaggcacgagggggagatgtataccatgcagtacggcagccagcagcctgacatg
tacaaccagtacagcactggttattctggtcctgagaggaggcccatgcagggccagttc
ccttacccctccccctacagccgagagcgcatgcaggcctctggccaggggcagcacccc
cagcaacccatgggtccccagatgatggccggggggccaccctccaacaacggggtggaa
ggaccccaggggcccaacatgtggccctccaggacagacatgggttatccctactctaac
agacagggggcaccctcccaggtaccgtcatacggtcctttggggagaggagaggatatg
gagggccgacccatccaagaaggtcagtggctcgggcatggaggccatcgccagtcctcc
tacatgtcaggtggtatgacacctatgtcctctcgccagcccccctctgcctaccagacc
tccccctccatggccaaccacctgccccgagcacccagccccggctcctaccagcgctcc
atggaggcacggatgtcccccaacaaagctgcctatatgggctccatgaagatgccatgc
aaaccgggcatgcccatgccagggcagggtagtgggcacccaggccaggtcccacctaac
ctgcggagagacctcaactaccctctaggatctgtagaggccaccatgccccttctcaag
ccccgccgcaaaattacctcaaaggacactggaaccccagaggcgtggcgagtgatgatg
tctctgaagtcaggtctgctgggtgagagtacctgggccctggacaccgtcaacatcctg
ctgtatgatgacagcactgtggcctccttcaccctcgcacagttgcctggcttcctggag
ctgatagtggagtacttcagacgctgtgtgatggagatctttggcatcctggaggagtat
gagatagggaccatcggccagaagaccctcctggggcctgaagcctgtaaccagggggag
gcgctgacctctgaacctgagatggactgtgaggccagccaaccagagcctgagtctgaa
caggaggtggagaggggggaggtagagaagggggaagtagaaaatggggaggacaaacct
gctgacatcacagagaaaattacagtggaactgatgtcaccccccagtgcaacggtacca
gcccctgaggaaacgaaggaggaatctgaagccgaagtgaaggtaaagaaggaagagggg
gagaaagaacaggagggagagaaagggaaagaggaaggagaaaagcccacagagagtaag
aaagtcccagctgaaagtaaggaagactatcctaatcagtcagagccaaggccacaacag
gccagcaagtacgacaagtttcccattaagatcctgcacaaagaggacctgattgaggac
atgacggagcagctggctcacgtgacagagttcactagtggactgctccactggcaggta
ggcgggggggattccacggcccacatccagacccactttgagggcaggggagagcagcct
gacaggacggagggagagagagatgaatgtgctattctgaataaagaacaggagactgac
tcgaggacagaggagaaggggaatcgtatcaccgccaccatcgatgacatactgtgtgcc
cggctcgaggctctgtcagagggccacccgacccattctgcacccacctacccattcagg
ctgcaccagggtgggggccacaagcacatcaccctgctggaggacgagccccgctgtttg
aacgaggctcccctctcagcagcttctccttggcaggactccctggccaagcgctgcctc
tgtgtgtccaacatcctccgcagcctctccttcatccctgggaacgactcagacatgtcc
cgtcacccaggcctggtactgatcctgggcagactgctgctgctccaccaccagcaccca
gagaggaagaggacgtcccctagctaccagagagaggaggtgcaggagcggggcctggcc
tgcagtaaggatgagtggtggtgggactgtctcactgtactcagggaggacaccttggtc
accctggctaacatctctggccagctggacctttccctctacccagagaccatctgcctg
cccatcctggatggcctactccactggatggtgtgtccctctgccgaggcccaggacccc
ttcccctcggccgccccccactcccccctaaccccccagagactggtgctggagtgcctg
tgcaagctgagcatccaggacaacaacgtggacctgctgctggccacgccaccgttcagc
cgccaggagaagctgtatgccaccttggtgcgctacgtgggtcagcgtaagaaccaggtt
taccgcgaaatggctgtggccaccctctccaacctggcacagggggactccacgtcggca
cgcgccatcgcagtacagaaaagcagcgtgggtaacctgatgggcttcctggaggatggg
gtgagcatggcccagtaccagcagaacccccacagcctgatgcacatggcccaccacccc
cccatggagccccccagtgttaacatgatgtgtcgggctgcaaaggctctgctggctatg
gccaaggtagaggagaacaggccagagtttgtcttgtatgagggcagactcctggacatc
tccatctcctctgtgctcaacccgggggtagccagcattgtatgtgaagtactctttcag
tttgttaaaaaattatga
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integrated database retrieval system
