Oncorhynchus kisutch (coho salmon): 109903959
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Entry
109903959 CDS
T09179
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109903959
09123 Folding, sorting and degradation
03018 RNA degradation
109903959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109903959
03041 Spliceosome [BR:
oki03041
]
109903959
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109903959
mRNA cycle factors
Stress granule specific factors
109903959
Spliceosome [BR:
oki03041
]
Complex C
Other components
Complex C specific factors
109903959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_5
RRM_7
RRM_3
ApbA_C
Motif
Other DBs
NCBI-GeneID:
109903959
NCBI-ProteinID:
XP_020356584
Ensembl:
ENSOKIG00005017764
LinkDB
All DBs
Position
LG14:31948140..31957125
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AA seq
637 aa
AA seq
DB search
MNTETTGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
SQPTDAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGDDMNDDKLKEMFDQYGRILSVKVMTDPSGKSRGFGFVSYE
KHEDANKACEEMNGQEFNGKTVFVGRAQKKIERQGELKRKFEMLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFTPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRITGMRAMPANAIINQFQPASGYFMPAVPQGQNRT
TYYAPNQLTQMRPNPRWQQQGGRGQGGFQGMPNSLRQPGPRANLRHLAPSAQGPRGMGPA
GAQRVGGAGQAMGPRPSMGVPAPRAMPPYKYATSIRNTNPQVVQPIALQQAQPAVHVQGQ
EPLTSSMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHES
LRSKVEEAVAVLQAHQAKKDATQKVGVIPTTTAASTS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagagactacagggagttatccaatggcttctctctatgttggcgatctgcac
cctgatatcacggaggctatgctgtatgagaaattcagcccagcaggaccggtgttgtct
attcgagtatgtcgtgatatgatcacccgacgctctctgggttatgcctatgtgaatttc
tcgcaacccaccgacgccgagagagccctggacaccatgaactttgatgtggtgaaaggg
aagccaatcagaatcatgtggtcacagagagacccctcactcaggaagtctggggtgggc
aacgtgttcatcaagaacctggacaagaccatcgacaacaaggccctctatgacaccttc
tctgcctttgggaacattctgtcttgcaaagttgtgtgtgatgagaatggatccaaagga
tacgcgtttgtccactttgagacgcaggacgcagccgaccgtgccattgagaagatgaac
ggcatgcttctgaacgaccgcaaggtgttcgttggacgtttcaagtctcggaaggagagg
gaggcagaactcggggccaaagcaaaggagttcaccaacgtctacatcaagaactttgga
gacgacatgaacgatgacaagctaaaggaaatgtttgaccaatacggtagaattctcagt
gtgaaggttatgaccgaccctagtggcaaatctcgaggctttggctttgtgagttacgag
aaacacgaggatgctaacaaggcatgtgaggagatgaacggccaagagttcaatgggaag
actgtgtttgtgggacgcgctcagaagaagattgaacggcagggggagctgaagaggaag
tttgagatgctgaaacaggagaggatcagccgttaccagggtgttaacctttacattaag
aacttggacgacaccattgacgacgagaaactgcgcaaggaattcaccccattcgggtcc
atcaccagtgccaaagtgatgctggaggaggggcgttccaagggctttgggtttgtctgc
ttctcctctcctgaggaggccaccaaggctgtgactgagatgaacgggcgcattgtgggc
tccaagcccctctacgtggccttggctcagcgcaaagaagaacgcaaggcccacctcact
aaccagtacatgcagcgcatcactggcatgagggccatgcctgccaacgccatcatcaac
cagttccagcccgccagtggatactttatgcctgcagtgcctcagggccaaaacaggacc
acctactatgcacccaatcagctgacccagatgaggcccaacccccgctggcagcagcag
ggtggcagaggccaaggtggtttccaggggatgcccaactccctgcgccagcctggtcca
cgtgccaacctgagacacctggctcccagcgcccagggcccacgaggcatggggcctgct
ggagctcagagagttggaggtgctggccaggctatgggtcctcgtccctccatgggagtc
cctgcccctcgtgccatgccaccctacaagtacgccaccagcatacgcaatactaacccc
caagtggtgcagcccatcgccttacagcaggctcagccagctgtacatgtgcagggtcag
gagcctctcacatcttccatgctggcttctgcacccccccaggagcagaagcagatgctg
ggggagcgcctgttccccctgatccaggccatgcaccccagcttggcagggaagatcact
gggatgctgcttgagattgacaactctgagctgctgcacatgctggagtcccacgaatcc
ctgcgctccaaggtggaggaggctgttgccgttctgcaggcccaccaggcaaagaaggat
gccacacaaaaagtgggagtcatccctacaaccactgctgcctctacttcctga
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integrated database retrieval system