KEGG   Oncorhynchus kisutch (coho salmon): 109903959
Entry
109903959         CDS       T09179                                 
Name
(RefSeq) polyadenylate-binding protein 4
  KO
K13126  polyadenylate-binding protein
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03015  mRNA surveillance pathway
oki03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109903959
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109903959
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109903959
   03041 Spliceosome [BR:oki03041]
    109903959
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     109903959
   mRNA cycle factors
    Stress granule specific factors
     109903959
Spliceosome [BR:oki03041]
 Complex C
  Other components
   Complex C specific factors
    109903959
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 RRM_7 RRM_3 ApbA_C
Other DBs
NCBI-GeneID: 109903959
NCBI-ProteinID: XP_020356584
Ensembl: ENSOKIG00005017764
LinkDB
Position
LG14:31948140..31957125
AA seq 637 aa
MNTETTGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
SQPTDAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGDDMNDDKLKEMFDQYGRILSVKVMTDPSGKSRGFGFVSYE
KHEDANKACEEMNGQEFNGKTVFVGRAQKKIERQGELKRKFEMLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFTPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRITGMRAMPANAIINQFQPASGYFMPAVPQGQNRT
TYYAPNQLTQMRPNPRWQQQGGRGQGGFQGMPNSLRQPGPRANLRHLAPSAQGPRGMGPA
GAQRVGGAGQAMGPRPSMGVPAPRAMPPYKYATSIRNTNPQVVQPIALQQAQPAVHVQGQ
EPLTSSMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHES
LRSKVEEAVAVLQAHQAKKDATQKVGVIPTTTAASTS
NT seq 1914 nt   +upstreamnt  +downstreamnt
atgaatacagagactacagggagttatccaatggcttctctctatgttggcgatctgcac
cctgatatcacggaggctatgctgtatgagaaattcagcccagcaggaccggtgttgtct
attcgagtatgtcgtgatatgatcacccgacgctctctgggttatgcctatgtgaatttc
tcgcaacccaccgacgccgagagagccctggacaccatgaactttgatgtggtgaaaggg
aagccaatcagaatcatgtggtcacagagagacccctcactcaggaagtctggggtgggc
aacgtgttcatcaagaacctggacaagaccatcgacaacaaggccctctatgacaccttc
tctgcctttgggaacattctgtcttgcaaagttgtgtgtgatgagaatggatccaaagga
tacgcgtttgtccactttgagacgcaggacgcagccgaccgtgccattgagaagatgaac
ggcatgcttctgaacgaccgcaaggtgttcgttggacgtttcaagtctcggaaggagagg
gaggcagaactcggggccaaagcaaaggagttcaccaacgtctacatcaagaactttgga
gacgacatgaacgatgacaagctaaaggaaatgtttgaccaatacggtagaattctcagt
gtgaaggttatgaccgaccctagtggcaaatctcgaggctttggctttgtgagttacgag
aaacacgaggatgctaacaaggcatgtgaggagatgaacggccaagagttcaatgggaag
actgtgtttgtgggacgcgctcagaagaagattgaacggcagggggagctgaagaggaag
tttgagatgctgaaacaggagaggatcagccgttaccagggtgttaacctttacattaag
aacttggacgacaccattgacgacgagaaactgcgcaaggaattcaccccattcgggtcc
atcaccagtgccaaagtgatgctggaggaggggcgttccaagggctttgggtttgtctgc
ttctcctctcctgaggaggccaccaaggctgtgactgagatgaacgggcgcattgtgggc
tccaagcccctctacgtggccttggctcagcgcaaagaagaacgcaaggcccacctcact
aaccagtacatgcagcgcatcactggcatgagggccatgcctgccaacgccatcatcaac
cagttccagcccgccagtggatactttatgcctgcagtgcctcagggccaaaacaggacc
acctactatgcacccaatcagctgacccagatgaggcccaacccccgctggcagcagcag
ggtggcagaggccaaggtggtttccaggggatgcccaactccctgcgccagcctggtcca
cgtgccaacctgagacacctggctcccagcgcccagggcccacgaggcatggggcctgct
ggagctcagagagttggaggtgctggccaggctatgggtcctcgtccctccatgggagtc
cctgcccctcgtgccatgccaccctacaagtacgccaccagcatacgcaatactaacccc
caagtggtgcagcccatcgccttacagcaggctcagccagctgtacatgtgcagggtcag
gagcctctcacatcttccatgctggcttctgcacccccccaggagcagaagcagatgctg
ggggagcgcctgttccccctgatccaggccatgcaccccagcttggcagggaagatcact
gggatgctgcttgagattgacaactctgagctgctgcacatgctggagtcccacgaatcc
ctgcgctccaaggtggaggaggctgttgccgttctgcaggcccaccaggcaaagaaggat
gccacacaaaaagtgggagtcatccctacaaccactgctgcctctacttcctga

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