KEGG   Oncorhynchus kisutch (coho salmon): 109903961
Entry
109903961         CDS       T09179                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03082  ATP-dependent chromatin remodeling
oki03083  Polycomb repressive complex
oki04110  Cell cycle
oki04330  Notch signaling pathway
oki04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    109903961
   03083 Polycomb repressive complex
    109903961
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    109903961
   04350 TGF-beta signaling pathway
    109903961
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    109903961
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oki03036]
    109903961
Enzymes [BR:oki01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109903961
Chromosome and associated proteins [BR:oki03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     109903961
   HDAC complexes
    Sin3A-HDAC complex
     109903961
    BRAF-HDAC complex
     109903961
    REST complex
     109903961
    SHIP complex
     109903961
    MiDAC complex
     109903961
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     109903961
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    109903961
  Chromatin remodeling factors
   NuRD complex
    109903961
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 109903961
NCBI-ProteinID: XP_020356586
Ensembl: ENSOKIG00005017633
UniProt: A0A8C7GDB7
LinkDB
Position
LG14:31924313..31937102
AA seq 497 aa
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSAIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEDPNKRISIRAHDKRIACDEE
FSDSEDEAEGQGGGRRNAASFKKAKRTKTEEDKEGEEKKAGDEKKADEKKEVKEEKVPDE
EKMDTSTKGPKEESKTP
NT seq 1494 nt   +upstreamnt  +downstreamnt
atggcgctgagttctcaaggaacaaagaaaaaagtttgctactattatgatggtgatgtt
gggaattactactatggccagggccaccccatgaagccacaccgtatccgcatgacacac
aacctcttgctgaactatggtctctacagaaagatggagatataccgacctcacaaagcc
aatggcgaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttccatt
cggccagacaacatgtcagagtacagcaaacagatgcagagatttaacgttggagaggat
tgccctgtgtttgatggcctgtttgagttctgccagctctcaacaggaggctctgttgct
ggagctgtgaagctgaacaaacagcagacagacattgccattaactgggccggaggcctc
catcacgccaagaagtctgaggcgtcaggtttctgctatgtgaatgacattgtgctcgcc
attctggagttactgaaataccaccagagagtcctgtacatagacattgatatccaccat
ggagatggagtggaggaggcgttttacaccacagacagggtcatgaccgtgtccttccac
aagtatggagagtacttccccggcaccggagacctgagggatattggcgccgggaagggc
aagtactatgctgtgaattaccctctgagagatggtatagacgacgagtcttacgaagcc
atattcaaacctatcatggctaaggtgatggagatgtaccagcctagtgcagtggttctt
cagtgtggagctgactccctctcaggagacaggcttggctgctttaacctcaccatcaaa
ggccatgctaagtgtgtggaatacatgaagagcttcaacctgcccttgctgatgctgggt
ggtggaggctacaccatccggaacgtggcccgctgctggacctatgagacagccgtggcc
ctggacagcgccatacccaatgagcttccatacaatgattactttgagtactttgggccg
gacttcaaactgcacatcagcccctctaacatgaccaaccagaacaccaacgactacctg
gagaagatcaagcagcgtctgtttgagaacctgcgcatgctgccccatgccccgggtgtt
cagatgcaggccatcccagaagatgctgtgcaggaggacagtggcgatgaggaggaggaa
gaccctaacaaacgcatctccatccgtgcccacgataagaggatagcatgtgacgaggag
ttctccgactctgaggacgaggctgagggtcaagggggcggacgcagaaatgcagccagc
ttcaagaaggccaagaggaccaagactgaggaagacaaagagggtgaggagaagaaagca
ggtgacgaaaagaaagctgatgagaagaaagaagttaaagaagaaaaggtgccagatgag
gagaaaatggacacttccacaaaggggccaaaagaggagtccaagacaccgtga

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