Oncorhynchus kisutch (coho salmon): 109904040
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Entry
109904040 CDS
T09179
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
109904040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109904040
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
109904040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
LIM
PDZ_6
PDZ
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
109904040
NCBI-ProteinID:
XP_031649087
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All DBs
Position
LG2:32934562..33053781
Genome browser
AA seq
1255 aa
AA seq
DB search
MAAESNKDSLHYRRSLVIAPKTTTQFNQFLPTKDKPAAYVPAPLRKKRAERHEDSRRSWA
SPKYTEEDGTFTRLLQKYDVASDGSKSMTDLVVDQEALKQVRYEELQKIREQVKENEDQW
QDDLTKWKNRRKSFNSDIVKKKEEREQTTASSGIGSRGFQNSNWSSIGSRLNSLASLDQD
VFEDSAPVLRTLPPRSYTFDNPYTPLDRVRPTSSSVLPPREEACAATTATNRAVSPSRGN
MSDSIDSPFGSGSDITTTVGRTSNYNPYVPAPNPSERAPSLASRYTSAAKTEETFSTTTT
PSLLPKAHEPSRPWVGKVSEEVTPSTGGGSLYIQQPQYNSVVMDPQPMPPGVSRVSASLP
RSYMRSDSARLNSVVMPRPFGSQSTSVASLPPAYTAPLMADSQKSLNGETDFTKKLSAPS
RYIQVMTSEDKAHSLSSSAHSSGEEEEEEEKRSVTLATTLVPTLAPSPVPSQARSPSPAL
QTPKVAYTAPVSPLPTKDTNQESYADMRISLNQRPNSSRDFGFQTEWDSTGAHVTSIQPG
SPAELCQLQVGDEVMSVSGQRVAEMSYGKWKSSTEQALQQGSLTMDIRRHGRNNWDRDLP
SLPFKSHKTINLTSMDHHPTVIGFPDTTTVNATTSLDFTSRGSMETTKKVTTQPIIDVAS
NGVNGGFRDETVTVRNKEPISMKNFKRRSEFFEQGGSESAKSDMPVASIAPSSNRLSCDP
EEERRRQEKWQKEQERLLQEKYRRDQEKLEEEWRRAQQEAVTEGGRHHQEEPRGLEMDSR
SISALSPLRQPTMPWEEKEAQEEERGRRVEEEAQKRQEEEERRRVEEDRQKWEEGRRTEE
KEQELLRLQEERMRREKQEDEERRQREKEELRWQRRKEEEREERRRQEAAEQQHREKEKM
QEQQQQWVGDSYVYAKAQPEISIADRAKSKSTPELDDVEKTKGWYGSSGGMAQRLLEEEL
RRKADKKAQSLRAASELELERRNILNAMRYREPERVTSSCGIGEGLGRKGQQSVTQAELE
RQQILQEMKKKTNLATDNSWIRQRSTSTTNSKDPTASPIRRGESLDNLDTAPRSSWRSSW
TPGSTSSIHNYSRPHFALSGLKTTSSYSGVAYGGGGYGSEVGSRPGLATLPSSLSMSSLR
EARGCNLSSWSLRSPSPSSTPSLGPEPESRPSSQQRSRSVSGKKVCTFCDTVLGKGAAMI
IESLGLCYHLTCFKCIDCKSDLGGSEAGAEVRIRNRQLYCNSCYMRFKTGQPTSM
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagagtaacaaggattcgctgcactaccgccgctcgttggtcatcgcaccc
aaaacgaccacacagttcaaccagttcctgcccaccaaggacaagccagcagcctacgtg
ccagcacctctccgcaagaagcgggccgagcgccacgaggacagccgccgaagctgggcc
agccccaagtacactgaggaggatggcaccttcaccagactgctccaaaagtatgacgtt
gctagcgatgggagcaaatcaatgacagaccttgtggtggaccaggaggccctgaagcag
gtgcgctacgaggagcttcagaagatcagagagcaggtcaaggagaatgaagaccagtgg
caggatgacctcaccaagtggaaaaaccgtcgcaagagcttcaactctgatattgtgaag
aagaaagaggagagggagcagaccacagcgagcagcggaatagggagccgcggtttccag
aattccaattggagctccatcggcagtcgcctcaactccctcgcctctctggaccaggac
gtgtttgaagactccgccccggtcctccgcaccctccctccgaggagctacaccttcgac
aacccctacacccctcttgaccgcgtcagacccactagctcctccgtgctccccccaagg
gaggaggcgtgcgctgccaccacggcaaccaacagggctgtctcgccttctaggggcaac
atgagtgacagtatcgacagtcccttcggttctggtagcgacatcactaccactgtgggt
cgcacctccaactacaacccctacgttccagccccgaatccttcagagagagccccaagc
ctggcctcacggtacaccagtgcagccaagacggaggagaccttcagcaccaccaccacc
cccagcctactacccaaagctcatgagcccagtcgcccatgggtggggaaggtgtctgaa
gaagtgaccccatccactggtggtggctctctgtacatacaacagccacagtacaactcg
gtggtgatggacccacagcccatgcctcctggtgtgtctcgggtttctgcctctctcccc
aggagctacatgagatcggacagcgctcggctcaactctgtcgtcatgccaaggcccttc
gggagccagtctacaagcgtcgcatcactgccacccgcctacaccgctcctctgatggct
gactctcagaaaagtctgaacggagagacggatttcaccaagaagctgtcggcccccagc
cgctatatccaggtcatgacctctgaggataaggcgcactccctctccagctctgcccac
agcagtggagaagaagaagaagaagaagaaaaaaggagtgtgacacttgccacaacactt
gtccctaccctggccccttctcctgtcccttctcaggccaggagtccttcacccgccctc
cagaccccaaaagtggcctacacagccccagtcagtccgttacctacaaaagacactaac
caggagagctacgctgacatgcggatcagtctcaaccagaggcccaacagcagtcgagac
tttggcttccagacagagtgggactccactggagcacacgtcacctccatccaaccaggc
agcccagccgaactgtgccaactgcaggtgggcgacgaggtgatgtcggtgagcgggcaa
agggtggcagagatgagctacggcaagtggaagagcagcacagagcaagctctacagcag
ggaagccttaccatggacatacgccgtcacggcaggaacaactgggacagagacctacct
tccctgccgtttaaaagccataagaccatcaatctgaccagtatggatcatcatccaaca
gttataggtttccccgacacaaccaccgttaacgcaaccaccagcttggatttcacctct
cggggatccatggaaaccaccaagaaggtcactacccaaccaatcattgatgtagcatcc
aatggagtgaatggaggcttccgtgacgagacagtgaccgtgagaaacaaagaacccata
tccatgaaaaattttaaacggaggtcagagttttttgaacaaggaggatcagagtcagca
aaatcagatatgcccgttgcctccatcgctccctcctctaaccgcttgtcctgtgacccg
gaggaggagcgcaggaggcaggagaaatggcagaaggagcaggagagactcctacaggag
aaataccgtcgtgaccaggagaaactggaggaggagtggcgtcgggcccagcaggaggct
gtgacagaagggggaagacaccaccaagaggagccgaggggcctggagatggacagcagg
agtatcagtgccctctcccccctccgccagcctaccatgccctgggaggaaaaggaagcc
caagaggaggaaagggggaggagggtagaggaggaagcacagaaaagacaggaggaggaa
gagaggaggagagtggaggaggatcggcaaaagtgggaggaggggaggaggacggaggag
aaggagcaagagctgctgcgtcttcaggaggagaggatgaggagggagaagcaggaggat
gaggagaggagacagagggaaaaggaggagctgagatggcagaggagaaaggaggaggag
agggaggagaggaggcgccaggaggctgctgaacaacaacacagggagaaagagaaaatg
caggagcagcagcagcaatgggtcggggactcctatgtctatgccaaggcccaacctgag
atatccatagcagacagggcaaagtctaaatctactccagagctggacgacgtggagaaa
actaaaggctggtacggcagctcggggggcatggcccagaggttactggaggaggagttg
agacggaaagcagacaaaaaggcccagagtctccgggctgcgtcagaactggagttggag
aggagaaacatcctaaacgccatgagatacagagagccagaaagagtgactagcagctgt
gggataggcgaaggattggggaggaagggccagcagagcgtaacccaggcggagctggag
aggcagcagatcctgcaggagatgaagaagaagaccaacctggccacagacaacagctgg
atccgccaacgctccaccagcaccaccaacagcaaggaccccactgccagccccatcagg
agaggcgagtctctggacaacctggacaccgcgccccgttcttcctggcgctcatcatgg
acaccgggaagcacctcgtccatccacaactacagccggcctcattttgccctttctggt
ctcaaaactacatcctcctatagtggtgttgcctacggtggtggtggctatggcagcgag
gtcggaagtcgtcctggcttagccaccctgccctcctccctctctatgagctccctcaga
gaggccagggggtgtaacctatcttcctggtccctgcgctcaccctcgccatcctccacc
ccttctcttggccccgaacccgagtcacgcccatcctcacagcaacgcagcaggtcagtg
agtggcaagaaagtctgtacgttctgtgatacggtgctgggcaagggagccgccatgatc
atcgagtccctgggactctgctatcatttgacctgtttcaagtgtatcgactgtaagtct
gacctaggaggatcggaggccggagctgaggtcagaatacgtaaccgacagctctactgt
aactcctgctacatgcgattcaaaactggacagccaacgtccatgtga
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integrated database retrieval system
