Oncorhynchus kisutch (coho salmon): 109904113
Help
Entry
109904113 CDS
T09179
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X2
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04137
Mitophagy - animal
oki04140
Autophagy - animal
oki04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109904113
04137 Mitophagy - animal
109904113
04148 Efferocytosis
109904113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109904113
Transcription factors [BR:
oki03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
109904113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
109904113
NCBI-ProteinID:
XP_020356843
Ensembl:
ENSOKIG00005020990
LinkDB
All DBs
Position
LG14:complement(25280517..25315462)
Genome browser
AA seq
757 aa
AA seq
DB search
MNTVVPEKKSRVSSERRKEKSRDAARYRRGKESEVFYELAQELPLPHSVTSNLDKASIMR
LAISYLHMRKLLSTDKAVEKEQEESEMDSQLNGSYLKALEGFLMVLSKDGDMIYLSENVN
KCLGLAQFDLTGLSVFEYTHPCDHEELREILVHRTGTSKKSKGPNTERSFFLRMKCTLTS
RGRTVNVKSSTWKVLHCSGHVRVHEAPTEQSPIGHKEQPVSYLVLVCDPIPHPSNIEAPL
DTKTFLSRHTLDMKFTYCDERITELMGYDPEDLINRSVYEYYHALDADYLTKTHHNLFVK
GQVSTGQYRMLAKIGGFVWVETQATVIYNNKNSQPQCVVSVNFVLSGIEEEKMVLSLEQT
EDMRSVKKELVEEEEDEGSEAEVSPVLLKEEKVDVIKLFTQAMEAQPQASLYDRLKEEPE
ALTLLAPAAGDTIISLDFSSPDSDILLEEVPLYNDVMLPSTSDKLALPHSMLPPNEQPLI
PSASVDTKAGPDSFSTPGSHSSTEPDSPLNFCFPMDSDISAALKLDLVERLFAIDTEPKT
PFTSQGMEDLDLEMLAPYIPMDDDFQLRTLSPEEPPSCGPAQPLENSPLCSPLHLTQDVH
SYTDSPFSAPRSRTASPAPELAASPCPASLLTMRAPQMDREMSIRTLATQNSQRKRKLSL
SQAVGIVNGALLQDPPGAGKQLKVSELGSSEAPSNRTILLLPTDLASCLLGISSEGSGSP
FTLPQLTRYDCEVNAPVVGRQHLLQGEDLLCALDQVN
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagttgtcccagaaaagaaaagcagggtgagctcggagcggaggaaggagaag
tcccgggatgcagcgcgataccggagggggaaggagtcggaggtgttctacgagctggcc
caggagctgcccctgccccacagtgtcacctccaacctagacaaggcttctatcatgaga
ctggccatcagctacctgcacatgaggaaactgctgagcacagataaggcagtagagaag
gagcaggaggagagtgagatggactcccagctgaatggctcctatctgaaggctctggag
ggcttcctcatggtgctgtctaaagacggggacatgatctatctctctgaaaatgtcaac
aagtgcttgggtctggcacagtttgacctgacaggacttagtgtgtttgagtacacacac
ccctgtgaccacgaggagctaagggagatcctggtacacagaacagggacctctaaaaag
tccaagggaccaaacacagagcgcagcttcttcctgcggatgaaatgtaccctcaccagc
agggggcgcactgtcaatgtcaaatcatccacttggaaggttctccactgctcaggccat
gtgcgagtccatgaagccccaactgagcagagccccattgggcacaaggagcagcccgtc
tcctacctggtgctagtctgtgaccccatcccccacccctccaacatcgaggcgccattg
gacaccaagaccttcctcagccgccacacactggacatgaagttcacctattgtgacgag
aggatcactgagctgatgggctatgatccagaggacctgataaatcgctctgtgtatgag
tactaccatgccttggacgcagactacctcactaagacccatcacaacttgtttgttaag
ggccaggtgagcacaggccagtaccgcatgctggctaagataggtggctttgtgtgggtg
gagactcaggccactgttatctacaacaacaagaactcccagccccagtgtgttgtctct
gtcaactttgtgctcagtggcattgaggaggagaagatggtgctgtctctagagcagact
gaggacatgaggtctgtaaagaaggagctggtggaggaggaagaggacgagggctcagag
gcagaggtgtcccctgtgctcctgaaggaggagaaggtggatgtgattaagctgttcacc
caggcaatggaggcccagccgcaggcgagcctgtatgacagattgaaggaggaaccagag
gccctcacccttctggccccggccgcaggagacaccatcatctccctggacttcagcagc
cccgactctgacatcctgctggaggaggtgcctctctacaacgatgtgatgctgccctcc
accagtgacaagctggccctgcctcactctatgctgccccccaatgagcagcccctgatc
cccagtgcctcggtggacaccaaggcaggtccagactccttcagcaccccaggcagccac
agctcaactgagcctgacagcccgctgaacttctgttttccaatggactctgacatcagt
gctgcgctgaaactggacctggtggaaagactgtttgccatcgacacagaacccaagaca
cctttcacctcacagggcatggaggatctggacctggagatgttggctccatacatcccc
atggatgatgacttccagctgcgcaccctgtccccagaggagcccccatcgtgtggccca
gcccagcccctggagaactctcctctgtgctctcctctgcacctcacccaggatgtccac
agctacactgattccccctttagtgccccaagaagccggacagcttccccagccccggag
ctggcagctagcccttgccctgcctccttactcaccatgagggcgcctcagatggacaga
gagatgtccatcaggacactggccacccagaactcacagcgcaagagaaagttgtctctg
tctcaggctgtcggaatagtaaatggggcattgctccaggaccctcctggggcaggtaaa
cagctcaaggtgtctgagctgggcagctctgaggctccctccaacaggaccatactgctc
ctacctacagacctggcaagctgcctgcttggcatctcctcggagggcagcggctcaccc
ttcacccttccacagctgacccggtatgactgtgaggttaatgcccccgtggtgggtcgc
cagcacctgctgcagggcgaggatctgctgtgtgccctggaccaagtcaactga
DBGET
integrated database retrieval system
