Oncorhynchus kisutch (coho salmon): 109904367
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Entry
109904367 CDS
T09179
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03082
ATP-dependent chromatin remodeling
oki03083
Polycomb repressive complex
oki04110
Cell cycle
oki04330
Notch signaling pathway
oki04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109904367
03083 Polycomb repressive complex
109904367
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
109904367
04350 TGF-beta signaling pathway
109904367
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
109904367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oki03036
]
109904367
Enzymes [BR:
oki01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
109904367
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
109904367
HDAC complexes
Sin3A-HDAC complex
109904367
BRAF-HDAC complex
109904367
REST complex
109904367
SHIP complex
109904367
MiDAC complex
109904367
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
109904367
Heterochromatin formation proteins
Other heterochromatin formation proteins
109904367
Chromatin remodeling factors
NuRD complex
109904367
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
109904367
NCBI-ProteinID:
XP_031644934
Ensembl:
ENSOKIG00005034096
LinkDB
All DBs
Position
LG14:82446678..82459258
Genome browser
AA seq
485 aa
AA seq
DB search
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ASGEEMTKYHSDDYIKFLRSIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDSIIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEEDESPDKRISIWAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKEKEAEEKKDVKEEKETEEKMDTTGPTE
ETKTS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcgtctgcaggaggaacaaagaagaaagtttgttattattatgatggcgac
gttggtaattattactatggccagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctcctgctcaactatggactgtacaggaagatggagatatatagaccccacaag
gccagtggagaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttcc
atccggccagacaacatgtcagagcacagcaaacagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctgtttgagttctgtcagctctcaacaggaggctctgtc
gcgggggcagtgaagctgaacaagcagcagacggacatcgccatcaactgggccggagga
ctccatcatgccaagaagtctgaggcctctgggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctcaagtaccaccagagggtgttgtacatagacatcgacattcac
catggagacggggtggaagaggctttcttcaccacagaccgggtcatgacggtgtccttc
cacaagtatggagaatacttccctggtaccggagacctgagggacattggagcagggaaa
gggaagtactacgctgtaaactaccctctcagagacggcatcgacgatgagtcttacgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgttccagcccagtgcagtcgtg
ttacagtgtggagccgactctctctcaggagacagactgggctgtttcaacctgaccatc
aaaggtcatgctaagtgtgttgagtacatgaagagtttcaacctgcctctgttgatgttg
ggaggtggaggttataccatccgtaacgtggcccgctgctggacctacgagaccgctgtg
gctctggacagcattatacctaacgagctgccttacaacgattactttgagtactttggt
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggttgtttgagaacctgcgcatgctgccccacgccccgggg
gttcagatgcaggccatcccagaagacgctccacacccggactctggagatgaggaggac
gagagccctgataaacgcatctccatctgggcccatgataagaggatagcctgtgaagag
gagttctctgactctgaggatgagggacagggaggaggtggaaggaggaacgctgccaac
cacaagaagaccaaacgagtcaagactgaggaggagaaagagaaggaggcagaggagaag
aaagatgtgaaagaggagaaagagactgaggagaagatggacacaacagggccaacagaa
gaaacgaagacgtcctga
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integrated database retrieval system
