Oncorhynchus kisutch (coho salmon): 109904436
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Entry
109904436 CDS
T09179
Name
(RefSeq) thrombospondin-3b-like
KO
K04659
thrombospondin 2/3/4/5
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04145
Phagosome
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109904436
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
109904436
09144 Cellular community - eukaryotes
04510 Focal adhesion
109904436
09142 Cell motility
04820 Cytoskeleton in muscle cells
109904436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109904436
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109904436
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109904436
Membrane trafficking [BR:
oki04131
]
Endocytosis
Phagocytosis
Opsonins
109904436
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109904436
Exosomal proteins of colorectal cancer cells
109904436
Exosomal proteins of bladder cancer cells
109904436
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109904436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
109904436
NCBI-ProteinID:
XP_031644541
Ensembl:
ENSOKIG00005023505
LinkDB
All DBs
Position
LG14:60063362..60096212
Genome browser
AA seq
955 aa
AA seq
DB search
MDMVRLVLNVLLASAAVLLGLTRASEMQVIDMLELHDARQSASAVGKMSGALGFVSDLYL
VSTLRLPPKLGGVLLGVYNKGDNRKYLEVALMGKVNKVLVRYVRKDGKLHTVNLQNPGLS
DGRTQSLILRVGGLQRNHPHMELYVNCRLADSAQVLPSMVQLPAEAESVEIRNGQKAYAR
LQGSVDSLKLALGGSIAKAGILTDCPFHGDTHFPNSVSADVNAILGDHTKALIGQLIIFN
QILGELREDIREQVKEMSLIRNTILECQVCGFHETHSRCEPNPCYKGLACTETREYPGYR
CGACPDGMTGNGTHCQDTDECALARPCFSPEGCVNTAKGFTCEPCPVGFSGPLLSGLGVE
FAKSHKQKCRDVDECAVLYKACVPNSVCINTEGSFRCGPCKESFVGNQTVGCFLRRSCAT
LGFNPCDVNAHCVIKGAARVSCECNVGWAGNGHTCGPDTDIDGYPDQPLPCIDNDYHCRA
DNCVNTPNSGQEDADGDGIGDQCDEDADGDAIKNVEDNCPLVPNKDQQNSDTDSYGDTCD
NCPNVPNGSQKDTDGNGAGDTCDNDIDGDGIPNVLDNCPKVPNPMQTDRDGDRVGDACDS
CPEVNDPMQSDTDNDLVGDVCDTNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGIGNECD
DDDDNDGIPDARPPGPDNCRLIPNPSQTDTNGNGIGDMCENDFDNDSVIDLIDVCPESSE
VTMTDFRNYQTVILDPEGDAQIEPKWIVLNRGMEIVQTMNSDPGLAIGYTAFNGVDFEGT
FHINTATDDDYVGFIFGYQDSSSFYVVMWKQKEQTYWQSLPFRAMAQPGLQLKAVKSRTG
PGEYLRNALWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQMGYIKVRLYEGMTL
VADSGVLVDTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYRKQIHIRV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggatatggtgaggttagtgctaaatgtgctgcttgcgagcgcggcggttctcttgggc
ttgaccagggcttcagaaatgcaagtgattgacatgctggagctgcacgatgccaggcag
agtgcgtccgcggtggggaagatgtcgggggctctgggcttcgtgtcggacctttacctg
gtgtcaactcttcgtctgccgcccaaactgggaggagtgctgttgggagtctacaacaaa
ggcgacaacaggaagtacctggaggtggccctcatgggcaaggtcaacaaagttctggtg
cgctacgtacgcaaggatggtaaactccacacagtgaacctccagaaccccggcctctct
gatggacgcacccagtcactcatcctccgtgtgggtgggctccaacgaaaccacccccac
atggaactctatgtcaactgccgattggctgactcagcacaggtcctgccatccatggtc
cagctcccagccgaggcagagtctgtggagatacgcaacgggcagaaggcctatgccagg
ctacagggctcagtggactctttgaaactggctttgggtggctctatagccaaagcagga
atccttaccgactgtccatttcatggagatacacattttccgaattcagttagcgccgat
gtcaatgccattctgggtgaccacaccaaggctttgattggccagctgatcatcttcaac
cagattcttggcgaactccgagaggacatcagggaacaggtaaaggagatgtctctgatt
aggaacactatcctggagtgccaagtgtgtggcttccacgagacccactctcgctgcgag
cccaacccctgctataagggcttggcctgtacagagaccagggagtacccagggtaccgt
tgtggtgcctgcccagacggcatgacggggaatggcacccactgccaggacactgacgag
tgtgctctagcccggccctgtttctcgcccgagggttgcgtaaacacggcaaagggcttc
acctgtgaaccatgtcccgtcggcttctccggacccctccttagcgggcttggggtggag
tttgccaagagccacaagcagaagtgcagagatgtggatgagtgtgctgtcctctacaag
gcctgtgtgccgaactctgtctgcatcaacacagagggctcgttcaggtgtggtccgtgt
aaggagagcttcgtaggcaaccagacggtgggctgtttcctacggaggtcctgcgccacg
ctgggcttcaacccctgtgacgtcaacgcccactgtgtcataaagggtgctgccagggtc
tcctgcgagtgtaatgtgggctgggcaggtaatgggcatacatgtggcccagacacagac
attgatggctaccccgaccaacctctcccctgcatagacaatgactatcactgccgagcc
gacaactgtgtgaacacgcccaactctggccaggaggacgcagacggagacggtataggt
gaccagtgtgatgaggatgcggacggagacgccatcaagaacgtggaggacaactgccct
ctggtccccaacaaagatcaacagaactcggacacagactcgtatggggacacgtgtgac
aactgccccaacgttcccaacggaagccagaaggacacagatggaaacggggctggggat
acctgtgacaatgacattgatggggatggtatcccaaacgtgctggacaactgtcccaag
gtgcccaaccctatgcagactgaccgtgatggggatcgagtgggggacgcttgtgacagc
tgcccggaagtcaacgaccccatgcagtctgatacagacaacgacctggtgggagatgtg
tgtgacaccaaccaggacatggatggggacggccaccaggattcaagggacaactgtcca
gacgtccctaacagctcccagctggactcagacaatgacggcatcggcaacgaatgcgat
gatgacgatgacaacgatggcattccagatgcgagacctcccgggccggataactgtcgt
ctcatccctaaccccagccagacagacactaatggaaatggcattggtgacatgtgcgag
aatgactttgacaacgactccgtgatagacttgattgacgtgtgtccagagagctctgaa
gtcacaatgaccgacttcagaaactatcagacggtcatcctggacccggagggcgatgcc
caaatcgaacccaagtggattgtgctcaatcggggtatggaaattgttcaaaccatgaac
agtgaccctggtttggccataggctacacagcctttaacggggtagactttgaagggaca
ttccacatcaacacggccacagacgatgactacgtgggcttcatcttcggttaccaggac
tcgtccagcttctacgtggtcatgtggaaacagaaggagcagacatactggcagtcactg
ccttttagggccatggcccagccaggcctgcaactaaaggcagtgaagtcacgtacgggt
ccaggcgagtacctccggaacgccctgtggcacacgggcgacaccccgggcgaggtcacc
ctgctgtggaaggacccccggaatgtgggctggagggacaagacatcctaccgctggcac
ctcagccaccgcccgcagatgggctacatcaaagtgaggctgtatgaaggcatgacattg
gtggcagactcgggcgtgctggtggacacctcaatgaggggcgggaggctgggcgtcttc
tgcttctcccaggagcaaatcatctggtccaacctgggctatcgctgcaacgatactgta
ccagaggactatgagttctaccgcaagcagatccacatcagggtgtga
DBGET
integrated database retrieval system