Oncorhynchus kisutch (coho salmon): 109904443
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Entry
109904443 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-5-like
KO
K06588
integrin beta 5
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04145
Phagosome
oki04148
Efferocytosis
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04810
Regulation of actin cytoskeleton
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109904443
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
109904443
04148 Efferocytosis
109904443
09144 Cellular community - eukaryotes
04510 Focal adhesion
109904443
09142 Cell motility
04820 Cytoskeleton in muscle cells
109904443
04810 Regulation of actin cytoskeleton
109904443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109904443
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oki04515
]
109904443
Membrane trafficking [BR:
oki04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
109904443
Cell adhesion molecules [BR:
oki04515
]
Integrins
Integrin beta subunits
109904443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
PSI_integrin
EGF_integrin
Integrin_b_cyt
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
109904443
NCBI-ProteinID:
XP_031652808
Ensembl:
ENSOKIG00005005816
LinkDB
All DBs
Position
LG2:50487596..50581160
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AA seq
811 aa
AA seq
DB search
MWSPWQLVYRTAFGCMVLEIFIHNVAQGLNVCMSGSATSCEECLLISPSCAWCAQEEFGR
ARTLTSRCDLSQNLQKRGCEAHNIESPSSTTMVVKSEPLSSKGSGPTQYDVIQIMPQKIS
LNLRPGDQTSFEVQVRQVEDYPVDLYYLMDLSLSMKDDLDTIRNLGTKLADEMRKLTSNF
RLGFGSFVDKNMSPFSYTATKYQDNPCNGENXGRALYKLFPNCVPSFGFRHLLSLTDKVD
RFNEEVQKQMVSRNRDAPEGGFDAILQAAVCKERIGWRKEAFHLLVFATDDVPHLALDGK
LGGLVQPHDGECHMNEKNEYSGSTKMDYPSLALLGEKLAENNIYLIFAVTKRLYVIYKNF
TALIPGTTVEILDQDSKNIIQLIVNAYNNIRSKVELTVWDQPEDLSLSFTATCQDGQPLP
GLRKCADLKIGDTVSFNVSVDARGCPAPGTQQRFTIKPVGFKNRLEVSVDYRCACGCTDQ
TQANSSRCSSIGQYTCGTCRCDPGYLGARCECQEGEAGSMYLSACREAEGKQICGGRGEC
SCNQCLCYESEFGKIYGTFCECDDFSCARHKGILCSGHGECHCGECKCHAGYIGDNCNCS
TDTSSCVSDDGKICSGRGSCVCGHCQCTEPGAFGDTCEKCPTCPDACGTKRECIECRLFD
SGRLSDNQTCQRLCKDEIITVETLKTEDPNAVLCLYKTENECVMKFMYSEHANGMSVLTA
LKEPECGAAPDAMTVLLAVVGSILLVGIVLLAIWKLVITVHDRREFARFQSARCRARYEM
ASNPLYKQPISSHPIETDFIMYGKSYNGAAH
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcccgtggcagttggtgtaccgtacagccttcggctgcatggttctggaaata
tttattcacaatgttgcacaaggactcaatgtttgtatgagtggcagcgctacatcctgt
gaagaatgcctcctcatctctccgagctgcgcctggtgcgcgcaagaggagtttggcagg
gcgaggaccctgacgtcacggtgtgacttgagtcagaacctgcagaagagaggctgtgag
gcccataacatagagagtcctagtagcacaaccatggtagtgaagagcgaacccctcagc
tccaaaggctccgggccgacccagtatgatgtcatccagatcatgccccagaagatctcc
ctgaatcttagaccaggtgaccagacctcattcgaagtgcaggtgcgtcaggtggaggac
taccctgttgacctgtactacctgatggacctgtctctgtccatgaaggatgacctggac
accatcaggaacctgggcaccaagctggctgacgagatgaggaaactcacctcaaacttc
agactaggctttggctccttcgtagacaagaacatgtcaccattctcttacacagccacc
aagtaccaggacaacccctgcaatggtgagaactgaggaagggcattatacaagctgttc
cccaactgtgtcccttcctttgggttccgccacctcctctccctgacggacaaggtggat
cgcttcaacgaggaggtgcagaaacagatggtgtctcgcaacagggacgctccggaggga
ggcttcgacgccatcctgcaggctgccgtctgtaaggagaggataggttggaggaaggag
gccttccacctgctggtgtttgccacagacgatgtgcctcacctggccttggacggtaaa
ctaggaggcctggtccagccccatgatggggagtgccacatgaatgagaagaacgaatac
agcggctccaccaagatggactatccctctctggctctgttgggagagaagctggcggag
aacaacatctatctcatcttcgccgtgactaaaaggctctatgtcatttacaagaatttc
acagcactgatacctggaactacagtggagattctggatcaggactccaagaacatcatc
caactcatcgttaacgcctacaataacatccggtccaaagtggagctgaccgtgtgggat
caacctgaagacctcagtctgtccttcacggccacctgtcaggacggacagcccctacca
ggcctcaggaagtgtgctgacctcaagatcggagacacggtgtccttcaacgtgagtgtg
gatgctaggggctgccctgcccctggcacccagcagagattcaccatcaaacctgtgggt
ttcaagaatcgtctggaggtgtcagtggactaccgctgtgcctgtggctgcaccgaccag
acccaggctaacagtagccgctgcagctctatcggacagtacacctgtggtacctgccgc
tgtgacccgggctacctgggcgcccgctgtgagtgccaggagggcgaggctggcagcatg
tacctgagcgcctgtagagaggcggaggggaagcagatctgtggtgggagaggggagtgc
agttgtaaccaatgcctctgctacgagtcagagttcgggaagatctacgggaccttctgc
gagtgtgacgacttctcctgcgcccgacacaagggcatcctctgctcaggtcacggagag
tgccactgtggggagtgtaagtgccatgcgggctacatcggagacaactgtaactgctcc
acggacacgtcttcctgtgtgtctgatgacgggaagatctgtagtgggcgaggcagctgt
gtgtgcgggcactgccagtgtacagaaccaggggcctttggggacacctgcgagaaatgc
cccacctgccccgatgcctgtggcaccaaaagggaatgcatcgagtgccggcttttcgac
tccggaagactgtccgacaaccagacgtgccagcggctatgcaaggacgagatcatcact
gtggaaacgcttaaaacggaagacccaaacgctgtcctttgcttgtacaagacggagaac
gagtgtgtgatgaagttcatgtactctgaacacgccaacggcatgtcagtcctcaccgcg
ctcaaagagccagagtgtggcgcagcgccggatgccatgacggtcctcctggcagtggtg
ggcagtatcctgctggtgggcattgtgctgctagccatctggaagcttgtcatcaccgtg
cacgaccgacgggagtttgcccgcttccagagcgcacgctgccgcgcacgttacgagatg
gcctccaaccccctctacaagcagcccatctccagccacccaatagagacagacttcatt
atgtatggcaagtcttacaacggagcagcccactga
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