Oncorhynchus kisutch (coho salmon): 109905011
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Entry
109905011 CDS
T09179
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109905011 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109905011 (polr1a)
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109905011 (polr1a)
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
109905011 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
SURF2
YceG
DUF272
Motif
Other DBs
NCBI-GeneID:
109905011
NCBI-ProteinID:
XP_020357712
Ensembl:
ENSOKIG00005019480
LinkDB
All DBs
Position
LG15:19879344..19892104
Genome browser
AA seq
1699 aa
AA seq
DB search
MLFGKEVPWRRLEGMTFGMYTAEEIRKLSVKNITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLSCPRAAIHLL
LNQLKLLDVGALQEVYELEHVLNQFLEGNAQASGVEIQVVLEDYCAHVNKRKTGDDHSSP
IKHICDKKNKLITLFWRVQMNSRKCPHCKSGRSQVRREHNSKLIVTLPAAMYKDGAIKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFSGLEELESSPSGFYPDLFFLELM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKELQLVEVQE
ADPSQTDQAFLAGIPGATLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGVPMVFATKLTYPQPVTPWNVKELRQAV
LNGPNVHPGASMVINEDGSRTILSSTSLTQREAIAKQLLTPCTGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLMNVIPGNHIPLNLTGKAKIPSKAWIKESPRCVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKRGANRQRKQIIKESVTCGTKALQAAFNLPDTVDESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGIKPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQPRQFPFIQDNYEVIRKSKCLDEVLAKLDPQAATNHFKAIRKWKAKREHLSPR
EGAFLLFSQKKLKKAERQALENLANGRDTATLKLVDRWSSLDQDSRSKYLKKTSHCPEPC
LSLFRPDISFGSVSETFESIVESYLKDIQVKQLSEGSSKNLDAQRLKHLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNSKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRVKNKQQKDRVFKIIFRFLSPER
YQEDKMLTPHQILHYMENRFFRLLLEAIKKRNTKLASINAVETRKATVRDNDQDVGDSSA
RQESGEGDGEEESMIVDDVGNEGDADASDAKRRENQEEEVDYESEEGEDAEGEDLVEEKE
ENSEEVPDEVPGDLATEEPGGAGARKRSKQKSTHTQDRMRVNTVLETSSSIEDYSYDSQQ
GLWCEVTLILPVSKVHFDLTSLVVAVAQNAVVMETKGITRCLLSEVTKKDGSKELELKTE
GINMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHL
SLVADYMCFEGVYKPLNRFAIQSNSSPLQQMTFETSYKFLKQATMLGSHDKLVSPSACLV
VGKVVKGGTGIFDLKQPLQ
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgggaaagaagtaccatggaggcggctggagggaatgacatttggaatgtac
actgcagaagaaataagaaagttgagtgtcaagaacataaccaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgacctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttgggcac
atcgagctacccttacccgtatacaacccactcttctttgataaactgtacctgctgatc
cgagggtcatgtctgaactgccacatgctgtcctgccccagagcagcgatccatctcctg
ctgaaccagctgaagctgctggatgtgggagctctacaggaggtctatgagctggagcat
gtgctgaaccagttcctggaaggcaatgcccaagcttctggggttgagatccaggtggtg
ttagaggactactgtgctcatgtcaacaaacggaagacaggcgacgatcacagctcacca
atcaagcatatctgtgacaagaagaacaagcttataacactcttctggagggtccaaatg
aactccaggaaatgccctcactgcaagagtggccgatcacaagtgcgcagggagcacaac
agcaaactgattgtcaccttgcctgcggctatgtataaagatggtgccatcaagggaccc
gatgaagaagatgggatggctggaaaacgtggatacttgacccctagcacggcacgggat
cacatcgccaaactttgggataaagaaggtttcttcctgaagtgcttgttctctggactg
gaggagttggagagctcacccagtggcttttaccctgaccttttcttcctggagcttatg
gtggtccctccatgcaggtatcggcccattaaccgtctgggagaccagatgttcactaac
ggccagacggttaacatgcaggcagtaatgaaggacagtggcgttatccagaagctccta
gcacttctagctggagagaagctgaaggaaaaggagttgcagctggtggaggtacaggaa
gccgacccctctcagacagaccaggccttcctggcagggatccccggtgccacactcaca
gataaactctacaacacctggattcggctccagagtcacgtcaatatagtctttgacagt
gacatggacaaactgatgacggagaagtaccctggcattcgtcagatcttagagaagaag
gatggtttgttcaggaagcacatgatgggcaaacgtgtggactatgcagcacgctctgtt
atttgtcctgacatgtacattgggaccaatgagattggagtacccatggtgtttgccacc
aagctgacttacccccaacctgtgacgccttggaatgttaaggagctgaggcaggcagtt
ctgaacgggcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctgagcagtactagcctcacccagagagaggccatcgccaagcagctcctcaca
ccctgcaccgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggc
gacgtcctgctcctcaaccggcagccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttaaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactgggcagg
gctgaggcctacacacttgtcagcactgaccagcagtaccttgtgcccaaggatgggaag
cctttggcaggtctgatccaggatcacatggtgtcaggcactaggatgaccatccgcggc
tgcttcttctcccgtgaccagtacactgagctggtctaccgaggtctgaccgacaaggtc
ggcagagtcaagctgctgccgcccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtctacactactgatgaacgtcatcccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggcctggatcaaggagtctccacgctgtgttcct
ggctacaagcctgaaaccatgtgtgactcccaggtgatcttccgtcagggagagttgctg
gtgggggtgttggacaaggcccactatggcagctcagcatacggcctggtccactgctgc
tacgagctatatggaggagagaccagcggtaaactcctcagctgcctggctcgcctcttc
actgcctacctccagctgtaccgggggttcactatgggtgtggaagatatcttggtgaaa
cgaggagccaacagacagagaaagcagatcataaaagagtctgtcacgtgtgggactaag
gccttgcaggcagcctttaacctgcctgacaccgtggacgagagtgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaacatggtggacctcaagttt
aaggaggtggccaatcaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcctgtctgctgggtcagattgagctggagggtcgacgt
cctcccctgatgccttctgggaaatctctgccatgcttccagccgtatgaaagttcgccc
cgctctggaggttttgtgtctggcaggttcctgacaggaatcaagcccccggagtttttc
ttccattgcatggctggccgggagggtctggtagatacagctgttaagaccagtcgatca
gggtaccttcagagatgtgtgatcaaacacctggagggcctggtggttcagtatgacctg
actgtgagggacagtgatggcagcgtggtccagtttctctatggagaggatggcctggac
gtccccaagacacagttcctccagccaaggcagtttccctttatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggccaaactggaccctcaggctgcc
accaaccatttcaaagccatcaggaagtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactgaagaaggcagagcgccaggctcta
gagaacctggccaatggcagggatactgccactctgaagttggtggatagatggagttct
ctagaccaggacagcagatctaagtacctgaagaagacttcacactgtcctgagccctgc
ctgagcctgttcaggcctgacatctcatttgggtcagtgtcagagacgtttgaaagcatt
gtggagtcctatctaaaggacatccaagtcaagcagttatctgagggaagctcgaagaac
cttgatgcacaaagactaaagcatctgctgcagctgaagtggcagcgagccctgtgtgac
ccaggggaggcggtgggtctgctggctgctcagagcatcggagagccctccacccagatg
accctcaacactttccattttgccggcaggggggagatgaacgttacccttggtatccca
aggcttagagaaatattgatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttaaacagtaaaaaagccatcaagcgggtgaagacactaaggaagaagctgact
cgcgtgtgtctagctgaggtgttgcacaaagtggatgtcctggagacactccgggtgaag
aacaaacaacagaaggaccgcgtcttcaagatcatcttccgctttctttccccagagcgc
taccaggaagacaagatgctgactccccatcagatcctccactacatggagaacagattc
ttccgcctactactggaggccattaagaagcgcaataccaagctggcctctatcaacgca
gtggaaacacgcaaggctacagtacgagataatgaccaggatgtaggggactcctcagct
agacaggagagtggagaaggggatggggaggaggagagcatgattgtggacgatgtgggg
aatgagggagacgctgacgcctcggatgcgaaaaggagagagaatcaggaggaagaagtg
gattatgagagtgaggagggagaggatgctgagggagaggacctggtggaggaaaaagag
gagaactctgaagaggtgcctgatgaggtgcccggtgacctggccactgaagagcctggt
ggtgctggggcaaggaagaggtcgaagcagaaaagcacacacacacaggacagaatgagg
gtcaacactgtgctggaaactagttccagcatcgaggactattcctatgacagccagcag
ggtctctggtgtgaggttacgctcatcctgcctgtcagcaaggtgcactttgacctgacg
tcgctggtggtggccgtggcccaaaatgcagtggtgatggagactaagggcatcaccaga
tgtctgctcagtgaggtcactaagaaagatggctccaaggagctggagctcaaaactgag
ggcatcaacatgcacgagctgtttaaccacagtgaaattcttgatgtgaatcggctgtac
tccaatgaggtccacgccatggcaaacacgtacggcattgaggtggccctgagagtcatt
gagaaggaaattaaagatgtcttcgctgtctacggtattgaggtggaccccaggcattta
tccttggtggcagactacatgtgttttgagggcgtgtacaaacctctcaaccgcttcgcc
attcagtccaactcctctccattgcaacagatgaccttcgagacgagctacaagttcctg
aagcaggccactatgttgggctcccatgataagttggtctctccctcagcttgcttagtg
gtgggtaaggttgtaaaaggagggactgggatctttgatctgaagcagccattgcaataa
DBGET
integrated database retrieval system
