Oncorhynchus kisutch (coho salmon): 109905064
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Entry
109905064 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109905064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109905064
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109905064
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109905064
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109905064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
109905064
NCBI-ProteinID:
XP_020357800
Ensembl:
ENSOKIG00005045327
LinkDB
All DBs
Position
LG15:complement(25927007..25944034)
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AA seq
577 aa
AA seq
DB search
MKSDSVTAGMPKEKYDPPDPRRMYTIMSTEEAANGKKSYWPELEITGNVRSLSPSLWTLT
HLTALHIADNCLSRIPPDIAKLHNLLYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRV
LPFELGKLFQLQTLGLKGNPLAQEIMSLYQEHDGTRKLLNYLLDNLAGSIKCTPTEQPPS
RSWIALQEPDQTRPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMNC
SADIISLQEVETEQYYQYFLPELKEQGYEGFFSPKSRARTMHESDRKHVDGCAVFYRTEK
FSVVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEESSGKSLHGME
KQLLLVANAHMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNSIPLVLC
ADLNSLPDSGVVEYLSQGGVDCTHKDFKELRYLDSLTNFNCNGKNGNSTSNSRITHGFKL
KSAYEDSLMPYTNYTFDFKGVIDYIFYSKPQLNVLGILGPLDSNWLHENSISGCPHPHIP
SDHFSLFTQLELLLPSTLPQGQVNNQVNGIHLPGGRR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcggacagtgttacagcaggaatgcccaaagaaaaatatgacccgccagacccc
aggcggatgtacaccatcatgtcaactgaagaggcagccaatggaaagaagtcttactgg
cctgagctggaaatcactggtaatgtcaggagcctgagcccgtctctgtggactctgacc
cacctcactgccctacacatcgctgacaactgtctgtcgcgcatcccacctgacattgcc
aaactacacaacctgttgtacctggatctatcgtccaataagatcaggagcctgccggca
gagctcggcaacatggtgtctctcagggaactgcttttaaataacaaccagttgcgggtt
ctgccatttgaattggggaaactgtttcagttacaaacactggggttgaaaggaaaccct
cttgcacaagaaatcatgagcctgtaccaggagcatgatggcaccaggaaactgctcaac
tacctgctggacaatctggcaggttcaatcaaatgcacccccacagagcagcccccgtcc
cggtcgtggatcgcacttcaggagcctgaccagacgaggccttctgcattgttctctgtt
atgtgctacaacgtgctgtgtgataagtacgccacacgccagctctacggctactgcccc
tcctgggccctcaactgggagtacaggaagaagtccatcatgcaggagatcatgaactgc
agcgctgacatcatcagcctacaggaagtggagacagagcagtactaccagtacttcctg
ccagagctgaaggagcagggctatgagggcttcttcagccccaagtctcgagccagaacc
atgcatgagtctgaccgcaaacatgtggacgggtgcgcagtattctacaggacagaaaag
ttcagcgtggtgcagaagcacacggtggagtttaaccagctagccatggctaactctgag
ggctctgaggccatgctcaacagggtcatgaccaaggacaacatcggagtggccgtactg
ctggaggtccgcaaggagatgatggaggaatcctcggggaagtctctgcacggcatggag
aaacagctcctactggtggccaatgcccacatgcactgggacccggagtactctgacgtc
aagctggtccagaccatgatgttcctgtctgaggtgaagaacatcgtggacaaggccacg
cgcagcctcaaactctcctctgtctctggggagaccaacagcatccctctagtgctttgt
gctgacctcaactctctaccagactctggcgtggtggagtacctgagtcaaggtggagtg
gactgcacccacaaggacttcaaggagctgcgctacctcgacagcctcaccaactttaac
tgcaacggcaagaacgggaactccacgtccaactccaggatcacccacggcttcaagctg
aagagcgcctatgaggacagcctgatgccttacaccaactacaccttcgacttcaagggt
gtgattgactacatcttctactccaagcctcagctcaacgtgttgggcatcctgggtccc
ctggactccaactggctccatgagaacagtatcagcggctgtccgcacccccacatccct
tctgaccacttttccctgttcacccagctggagctgctgctgcccagcaccctgccccag
ggccaggtcaacaaccaggtcaacggcatccacctgcctggaggccgcaggtag
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