Oncorhynchus kisutch (coho salmon): 109905119
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Entry
109905119 CDS
T09179
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X3
KO
K14407
cleavage stimulation factor subunit 2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109905119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109905119
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109905119
U7-dependent histone pre-mRNA processing factors
109905119
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
109905119
NCBI-ProteinID:
XP_020357894
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Position
LG15:29315135..29327089
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AA seq
576 aa
AA seq
DB search
MATLAAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRE
TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIE
SPYGDNIMPDEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAFAL
LQAQVVMRIVDPEIALKMLHRQTPVQPLVPNSQAGPVPVANQPIPPANAPVSQSQPMPGM
HMNGAPQMMQPPPMGGGPGPMPGQGPVGPPGPGGIPPRGLLGDGPNDPRGGTLLSVTGEV
IEPSRGGGFIGAPPPHQGPPMHMNQMAGGPPLDMRPPHDMRGPPMGEPRGMMGEPRGPPM
GEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGESRGMMGEPRGPPM
GESRGMMGEPRGPPMGEPRGMMGEPRGPPMMEQRGPPMMEPRGPPMENRGRDPRAVDPRG
PVSGQRVPTAQGMQGPSPHSMNTNAPPPARPGPGVPQSGGSFSPGQSQVTSQDHEKAALI
MQVLQLTPEQIAMLPPEQRQSILVLKEQILKTTGAP
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggcgactttagcagctgctgctgttgttgctgccgctggcagagatcccgctgttgac
cgttcattgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactg
aaagacattttttcagaagtcggtctcgttgtcagctttcggttggtgtatgatagggag
acaggcaagccgaagggatatggcttctgtgagtatcaggaccaggagacggccctcagt
gccatgcggaacctgaacggaagagagttcagcggccgggctctccgtgtcgacaatgct
gctagtgagaaaaacaaagaggagctcaagagtttggggacaggagcccccattattgag
tctccctacggggacaacatcatgccagacgaggctccagagtctattagcagagctgtg
gccagtttgcccccagagcagatgtttgagctcatgaaacagatgaagctgtgtgtgcaa
aacagtccccaggaggccaggaacatgctgttgcagaacccccagctggcctttgctttg
ctgcaggcccaggttgtcatgaggatcgtagaccctgagattgccctgaaaatgcttcac
cgtcaaaccccagtgcagccattggttcccaacagtcaagctgggccagtgccagtggcc
aaccagcctattcccccagccaatgctccagtctcccagtcacagcccatgccgggcatg
cacatgaacggagctcctcagatgatgcagccccctcccatgggtgggggacctgggccc
atgccaggacagggaccagtgggaccaccaggaccaggtggtatccctcccagaggcctg
cttggtgatggccccaacgaccccagaggaggaaccctgctctctgtcacaggagaggtc
atcgaacccagtcgaggaggaggcttcatcggggcccccccaccacaccaggggcccccc
atgcacatgaaccagatggctggagggcctcctctggacatgaggccgccccatgacatg
agaggaccccccatgggtgaacccaggggcatgatgggagagccccggggaccccccatg
ggtgaaccaaggggcatgatgggagagccccggggaccccccatgggtgaacccaggggc
atgatgggagagccccggggaccccccatgggtgaacccaggggcatgatgggagagccc
cggggaccccccatgggtgaatccaggggcatgatgggagagccccggggaccccccatg
ggtgaatccaggggcatgatgggagagccccggggaccccccatgggtgaacccaggggc
atgatgggagagccccggggaccccccatgatggaacagcggggaccccccatgatggag
cccaggggaccccccatggagaacagaggtcgggacccccgagcggtggacccccgtgga
ccagtgtcgggccagagggttcccactgcacaaggaatgcagggcccctctcctcactcc
atgaatactaatgcccctccacctgccagaccgggtcctggtgtaccacagtccggaggt
agcttcagcccagggcaaagccaggtgacctcacaggaccatgagaaggccgccttgatc
atgcaagtgctgcagctgaccccagaacagatcgccatgctgcccccagaacagagacag
agcattctcgtcctcaaagagcagatcctgaagaccaccggggcaccctga
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