Oncorhynchus kisutch (coho salmon): 109905225
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Entry
109905225 CDS
T09179
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki02010
ABC transporters
oki04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109905225
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109905225
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oki02000
]
109905225
Transporters [BR:
oki02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109905225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
109905225
NCBI-ProteinID:
XP_020358081
Ensembl:
ENSOKIG00005013160
LinkDB
All DBs
Position
LG15:complement(34136141..34178125)
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKDLIQALKTLQANTEGFKLKDFLHDNETLSTFLLRNASFSEHAVHQIIEADVNLE
KVLVKGFGVHLRDMCKSNGTSVEDFVTITDSEVSSLVQEILCRSPGSWLNQAESHFLNNL
DFLKPIRKDVRADPEAVQQVAEATDNLLESLGSLAIELASMKSWSDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNYKALFGNHNTTDGEEPISAYDNASTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPATPATQKIIHEVNRTFQELGVLRELG
GMWEEVRPKVWSFMESSEQMDLVRTLLKNNGTARFFTSQLAGTEWTVEDVSNFLTKHSED
TRPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPAIVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITVVTGAKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISASLLVVLLKMGNLLPYSD
PSVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFTKSYWFGEGDNRKTDFSQNKRRNCEAVCIEEEPA
HLKPGVFIENLVKVYPHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLLHKRTSKTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLHYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPSLSSFHNSSSTVSFTKKEEDCPSESSSDAGLGSEHESEAATIETAPAASICESAFVA
PDVSLISSLIFKHVPAARMVEDLGHELTYILPYGAAKDGAFVELFKDMDDRLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTELPSDGTIPMPRRRIHHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDAYPESRETDFLNGSDGKGSYQVKGWSLTRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDANTQRLLSA
LTEGPGFGTRCMEGQPITDTHCTMGDEDWTIPEVPESLLELFRTGNWTMEEPSPTCACSC
DGRKKMLPECPTGAGGLPPPQMKISETDTLQNLTGRNISDYLVKTYAEIIGKSLNNKIFV
NEFRYGGFSLGARSTQVLPPAGEVDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRANLPPGQDPSKFGIRTFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGNNEVGGINDILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSIVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGPDPDLPPVMKFIESKLPGSTLKEKHRNMLQYQLSSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVVDTTPL
SSRQAEEKLAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgctgttgtggaagaactttacctacagaagaagg
caaacgctccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgagtgtcatttccccaacaaggcc
atgccctcggcaggcacccttccgtggatccaaggcatcatctgcaacgccaacaacccc
tgcttccgcaatcccactcctggagagtcccctggggtcgtgggcaacttcaatgagtcc
ataatctctcgtttgttctcggatgccaagaagatcctgctgtacagtcagaatgaccgg
aatctggacggctttaaagacctcatccaagccctgaagaccctacaggccaacaccgaa
ggattcaagctgaaggatttcctccacgacaatgagaccctgtccacgtttctcctgcga
aacgcctccttctcggaacacgccgtgcaccagatcattgaggccgacgtaaacttggaa
aaggtgctggtcaaaggcttcggtgtccacctgagggacatgtgcaaaagcaacggcacc
agtgtggaggactttgtgaccatcacagacagcgaggtgtccagtctggtccaggagatc
ctctgccggtccccaggctcctggctcaaccaagcagaaagccacttcctcaacaaccta
gacttcctcaaaccaatacggaaagatgtgagggctgaccctgaagctgtccagcaagtg
gctgaggctacagacaaccttctggagagcctggggtccctggccattgagctggccagc
atgaagagttggagcgacctgcgtaacgagatcatcttcctcacggagaacgccacgtcc
tcccccagccacatgtaccaggccgtgtcgcgcatcgtctgcggccaccccgagggcggc
ggactaaagatcaagtccctcaactggtacgaggacagcaactacaaggccctgttcggc
aaccacaacacaaccgacggggaggaacctatctctgcctacgacaacgcatccactcca
tactgcaacgcaatgatgaggaacatggagtccagccccgtatccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctgtacacccctgccactcccgccacacag
aagatcatccacgaggtgaacagaacgttccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaggtgaggcccaaggtctggagcttcatggagagtagcgaacagatg
gacctagtaaggaccctactgaagaacaatggcaccgccaggttcttcacctcccaactg
gcgggcacagagtggaccgtggaggatgtctccaacttcctgaccaaacattcagaggac
acacgtccccacggcactgccttcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatttcccgcttcatggagtgtgtaaacctggataagatggagcctgtggcc
aatgaggaaaggatggtcaacaaatccatggcactgctggacgataggaagttctgggcg
gggatcgtgtttcccgacattgaggccaacagctctgaactgccggccattgtcaactac
aagattcgcatggacattgataatgtggagcgcaccaacaagatcaaagacggatattgg
gaccccggtcctcgtgccgacccctttgaggacctgcgctacatctggggcggcttctct
tacctccaggacatcatcgaacacagcatcatcacggtagtgactggcgccaaggagaag
acgggagtctacatccaacagatgccctacccctgctacgtggacgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtttacgagaaggaggcgaggctcaaggagaccatgaggatcatg
ggattggacaacggcatcctgtggttcagctggttcatcagcagcctcatccccctgctc
atctccgccagtctgctggtggtgctgctcaagatggggaacctgctgccctacagtgac
cccagtgtcatcttcctgttcctgggttccttcgccgtggtaaccatcatgcagtgcttc
ctcatcagcaccatgtttgcccgtgccaacctggcggcggcctgcgggggtatcatctat
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactacgtgggctttggg
gcaaaaatagtcgctagcctgctgtccccggtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccaatggaacaacctgttcaacagccccatg
gaggaggacgacttcagcctgaccaccgccatcatcatgatgtactttgactccttcctc
tacatggtgatgacctggtacatcgagtccgtcttccccggtcaatatggtattcccagg
ccctggtacttcctcttcaccaagtcctactggtttggagaaggagacaacaggaagact
gacttcagtcagaacaagagaaggaactgtgaagctgtctgtatagaagaagagccagcc
cacctgaaacctggcgtcttcatagagaacctagtcaaggtgtacccgcacgggaagaag
ctggctgtggacgggctgactctgggcttctacgagggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccaccatgtcgattctaacgggactgtttccccctacc
tctggcactgcttacatcatgggcaaagacatccgatcggagctgagcgctattcgacag
agtctgggcgtttgtccacagcataacgttctcttcagcatgctgaccgtcgaggagcac
atctggttttacgctcgtcttaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcctgatagacactggcctgctgcacaaacgcacttccaagaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggccttcgtcggggggtcaaaggttgtg
attctggacgagcccaccgctggggtcgacccctacgcccgccggggcatctgggacctc
ctgctccattatcgtcaaggtcgtaccatcatcctctccacccaccacatggatgaggcc
gacatattgggcgaccgcatcgccataatctcccatggcaagctttgctgcgtgggctcc
tccctcttcctgaagaaccagctaggtacaggctactatctgaccctggtcaagaagggc
ccagaaccttccctcagctccttccacaactcctccagcacagtctccttcactaagaag
gaggaagattgtccctctgagagcagctctgatgcaggccttggcagcgaacacgagagc
gaagcggccaccatcgaaactgccccggctgcatccatctgtgaaagtgccttcgtggcc
cccgacgtctccctgatctccagcctgatcttcaagcatgtcccagccgcccgcatggtg
gaagacctgggccacgagctcacttacatactgccctatggcgcagccaaggacggagcc
ttcgtggagctcttcaaggacatggacgaccgtctccccgacctaggcatctccagctac
ggcgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaatggagtt
gacactgaactcccctctgacggtaccatccccatgcccagacgtcgcatacatcatgct
tttggtggaggaaatgcctttggtggagaccaccagagctgccttagaccccagatagat
gacgacaacaatgaacataacgactcggacgcatacccagaatccagagagacagacttc
ctgaacggctcggacggtaaaggctcctaccaggtgaaaggctggagtctgacgaggcag
cagtttgtcgccttgatatggaagaggttcctgtatgctcaacgctccagaaaaggtttc
tttgctcagattgtgctccctgcagtgtttgtttgcatcgccctggtcttcagtctaatc
gtcccgccctttggaaaataccccagtctggagctgcagccgtggatgtacgaagaacag
tccctcttcatcagtgatgacgcccctgaagatgccaacacacagcggttattaagtgcc
ctcactgaaggccctgggtttggaacgcgttgcatggaaggacagcctataactgacact
cactgtacgatgggcgacgaggactggaccataccagaggttccggagagccttctggaa
ctgttccgcacgggcaactggaccatggaggagccgtcccccacatgcgcctgcagctgt
gacggccgcaaaaaaatgctccctgagtgtcctactggagccggaggactgccaccaccc
cagatgaagatcagcgagacagacaccctgcaaaacctgactggcagaaacatctctgac
tacctagtaaagacctatgcagagatcatcgggaaaagtttgaacaacaagatctttgtg
aatgaatttaggtacggcggcttctcattgggcgccaggagcactcaggtcctcccccca
gctggcgaggttgatgacgctatcgctcgagtgagaaagatttttgagttggagaagggt
gctgccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaaggggtggcacagcatgggagcctttctcaac
gtgatgaacaacggcatcttgcgcgccaacctgccccctggccaggaccccagcaagttt
ggcattcgcaccttcaaccacccgctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtgctggtgtccatctgcgtgatcttcgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgaacaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctctactggacggccaacttcatctgggatatg
tgtaactacatcgtcccggcgacactcgtcatcatcatctttgtctgcttccaacaaaaa
gcctacgtgtcgtccaccaacctgccagtgctggccctgttgctgctcctctatggctgg
tctatcactcctctgatgtacccggcatccttcttctttaagatccccagcacggcctac
gtggtgctcacctccgtcaacatcctcatcggcataaacggcagcatctccacctttgtc
atggagctctttggaaacaacgaggttggaggtatcaatgacatcctgaagaacgttttg
ctgatatttcctcacttctgtttgggtcgaggcctcatcgacatggtgaagaaccaggcc
atggccgacgctctggaaagattcggtgagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtcctcatccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtaggcgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cacggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcagaagccg
gcggtggaccgcctgtgtgtgggcatccctcctggagagtgctttgggctcttgggtgtg
aacggagctggaaagaccaccactttcaaaatgctgacaggagactccatagtcaccagt
ggagaggctttcctggccggaaaaagtatactgcgggagatagatgaggtgcaccagaac
atgggctactgccctcagtttgacgccatcaatgacctgctgacaggaagagagcacctg
gagttctacgccgtcctgcgcggcgtgcccgagaaggaagtgtgcgaagttgccgaatgg
ggcatccgtaagctgggcctagtaaagtatgtggataaggcagcgggaagctacagcgga
ggaaacatgaggaaactctccaccgccatggccctgataggaggaccacccgtcgtgttc
ctggacgagcccaccactgggatggaccccaaagcacgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccctgtgcaccagaatggccattatggtcaatggcaggttccgctgcttggggagc
gttcagcacttaaagaacaggttcggagacggctacaccatcattctgcgtgtggctggg
ccggaccctgacctgccgccggtgatgaagttcattgagagtaagctgcctggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgtcctcctcactcacctccctg
gcacacatcttcagcatcctggccaagaacaaggaccttcttcggatagaggactactcc
gtgtcgcagaccacactggaccaggtttttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagtaaagcgcaaagaggcggtggtggacactaccccgctc
agctcacggcaggctgaagagaagctagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
