KEGG   Oncorhynchus kisutch (coho salmon): 109905310
Entry
109905310         CDS       T09179                                 
Name
(RefSeq) cullin-4B isoform X1
  KO
K10609  cullin 4
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03420  Nucleotide excision repair
oki04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109905310
  09124 Replication and repair
   03420 Nucleotide excision repair
    109905310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oki04121]
    109905310
   03400 DNA repair and recombination proteins [BR:oki03400]
    109905310
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oki04147]
    109905310
Ubiquitin system [BR:oki04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     109905310
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      109905310
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      109905310
Exosome [BR:oki04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   109905310
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW DUF3292 PG_binding_4
Other DBs
NCBI-GeneID: 109905310
NCBI-ProteinID: XP_020358200
Ensembl: ENSOKIG00005029109
LinkDB
Position
LG15:41554089..41583283
AA seq 853 aa
MESLVEGLPSPNPPPPTQEARPAASDVNNDSSSITNSKKRKINRSEREDIDSISSSPKTH
NSSSSSTSQQIQKKLRFEDSVDFIGLDVKMAEESSSASCSSNKTKTVFLAGVVGHHANGL
TKTAGSTTFSSSKPGAAKKLVIKNFKEKPKLPENYTHETWQKLKEAVEAIQNSTSIKYNL
EELYQAVENLCSHKISARLYKQLRVVCEDHIKAQIDQFREDVLDSTLFLKKIDNCWQDHC
RQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDMKVQSKTIYGILLLIERE
RSGETIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEREVPEYLHHV
NKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTSTLQKGLNHLLDENRIQDLCLLY
QLFSRVRGGVLVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFIKN
EKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELEKMLDKIMIIFRFI
YGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKD
IMVQFKQCQNIPGNIELTVNILTMGYWPTYIPMEVHLPAEMVRLQEIFKTFYLGKHSGRK
LQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTLEEIKLATGIEDGELRR
TLQSLACGKARVIHKVPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMKETVEEQASTTE
RVYQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYME
RDKENPNQYNYVA
NT seq 2562 nt   +upstreamnt  +downstreamnt
atggaatcgcttgtagaaggtttaccttcccctaatcccccaccgccaacccaagaggct
agaccagcagcttcagatgtaaataacgacagcagtagtatcacgaattcgaagaagagg
aaaataaaccgttctgagagggaagacattgattcaatatcgtcatctcctaaaacccac
aattcctcttcgtcctccacttcgcaacaaatccagaagaagttgaggttcgaagattcc
gtagacttcataggactggatgtgaaaatggctgaggagtcgtcatctgcatcgtgttct
tcaaacaaaaccaaaacagtttttttggctggggttgttgggcatcatgcaaacgggctg
acgaaaactgcaggctccactaccttctccagcagcaaacctggagctgcaaagaaacta
gtcatcaagaactttaaagaaaagcccaaattgcctgagaactacacacacgagacctgg
caaaaactaaaggaggcggtcgaggccattcaaaacagcacttcaatcaagtacaatctt
gaggaactctaccaggctgtcgagaacctctgctcccataagatatctgccaggctctac
aaacagctacgggtggtttgtgaagaccacatcaaggcacaaatcgatcaattcagagag
gatgtactggacagtaccctcttcctgaagaaaatagacaactgttggcaagatcactgc
agacaaatgatcatgattagaagtatatttttgttcttggaccgcacctatgttttacaa
aactcaatgctcccatcaatctgggacatgggcctagagttgtttaggttttacataatc
agcgacatgaaggtccagagcaagaccatctacggcatcctgctgctcattgagagggag
cgcagcggcgagaccatcgaccgcagcctgctccggagcctactgagcatgctctctgac
ctacagatttatcaggactcctttgagcagcgctttctggaggagactaatcggctgtat
gctgctgagggacagcgactgatgcaggagagagaggtcccagagtatctccatcacgtc
aacaaacgcttagaggaggaagcggacagagtcatcacgtatctagaccagagcacacaa
aaacctctcattgccactgtggagaagcaactactgggtgaacatctcacttcaactctg
cagaaaggcttgaatcacctgctagatgagaacagaatccaggacttgtgtcttctctat
cagcttttcagtcgtgtgagagggggcgtactggttctcctacagcattggatcgagtac
atcaaggcctttggaagtacgatcgtcattaaccctgagaaggacaagaccatggtacag
gagctcctggacttcaaggacaaggtggaccacatcattgacatctgcttcataaagaac
gagaagtttgtcaatgccatgaaggaggcttttgagaccttcatcaacaagagaccaaac
aaacctgctgagctcatagcaaaacacgtggattcaaagcttagggcgggtaacaaggag
gcgacggacgaggagctggagaagatgttggacaagatcatgatcatcttccgattcatt
tatggcaaagatgtttttgaggccttctacaagaaagatctggccaagaggttgctggtg
ggaaagagtgcctccgtggatgccgagaagtccatgctgtcgaaactgaaacatgaatgt
ggagcagcattcaccagcaagctggaaggcatgttcaaggacatggagctttccaaggac
atcatggtgcagttcaaacagtgtcaaaacatccctggtaacattgaactgacggtgaac
atcctcaccatgggatactggcccacctacatcccaatggaggtccatctgcccgcagag
atggtgcgactgcaggagattttcaagacattttacctgggcaagcacagtggcaggaag
ctacagtggcagtcaacgttaggccattgtgttttaaaagctgaatttaaagagggcaaa
aaagagcttcaggtttccctgtttcagacgctagtgctgctcatgttcaacgaaggagag
gaattcaccttggaggagatcaagctagctacaggaatagaggacggcgagctgcgacgg
accctgcagtctttggcatgtggcaaggcacgggtcatccacaaagtccccaagagcaaa
gacgtggaggacggagacaagttctcctgcaacgatgacttcaaacacaaactcttcagg
atcaagatcaaccagatccagatgaaagaaacggtggaagagcaagccagcaccacggaa
cgagtctaccaggaccggcagtatcagatcgacgccgccatcgtccggatcatgaagatg
aggaaaactctgagccataatctcttggtgtcggaagtgtacaaccaactcaagttcccc
gtaaagcctgctgacctaaagaagagaatagagtctctcattgacagagattacatggag
cgcgacaaggagaaccccaaccaatacaactatgtagcttaa

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