Oncorhynchus kisutch (coho salmon): 109905310
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Entry
109905310 CDS
T09179
Name
(RefSeq) cullin-4B isoform X1
KO
K10609
cullin 4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03420
Nucleotide excision repair
oki04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109905310
09124 Replication and repair
03420 Nucleotide excision repair
109905310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109905310
03400 DNA repair and recombination proteins [BR:
oki03400
]
109905310
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109905310
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
109905310
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
109905310
TCR (transcription coupled repair) factors
Cul4-CSA complex
109905310
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109905310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
DUF3292
PG_binding_4
Motif
Other DBs
NCBI-GeneID:
109905310
NCBI-ProteinID:
XP_020358200
Ensembl:
ENSOKIG00005029109
LinkDB
All DBs
Position
LG15:41554089..41583283
Genome browser
AA seq
853 aa
AA seq
DB search
MESLVEGLPSPNPPPPTQEARPAASDVNNDSSSITNSKKRKINRSEREDIDSISSSPKTH
NSSSSSTSQQIQKKLRFEDSVDFIGLDVKMAEESSSASCSSNKTKTVFLAGVVGHHANGL
TKTAGSTTFSSSKPGAAKKLVIKNFKEKPKLPENYTHETWQKLKEAVEAIQNSTSIKYNL
EELYQAVENLCSHKISARLYKQLRVVCEDHIKAQIDQFREDVLDSTLFLKKIDNCWQDHC
RQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDMKVQSKTIYGILLLIERE
RSGETIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEREVPEYLHHV
NKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTSTLQKGLNHLLDENRIQDLCLLY
QLFSRVRGGVLVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFIKN
EKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELEKMLDKIMIIFRFI
YGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKD
IMVQFKQCQNIPGNIELTVNILTMGYWPTYIPMEVHLPAEMVRLQEIFKTFYLGKHSGRK
LQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTLEEIKLATGIEDGELRR
TLQSLACGKARVIHKVPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMKETVEEQASTTE
RVYQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYME
RDKENPNQYNYVA
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgcttgtagaaggtttaccttcccctaatcccccaccgccaacccaagaggct
agaccagcagcttcagatgtaaataacgacagcagtagtatcacgaattcgaagaagagg
aaaataaaccgttctgagagggaagacattgattcaatatcgtcatctcctaaaacccac
aattcctcttcgtcctccacttcgcaacaaatccagaagaagttgaggttcgaagattcc
gtagacttcataggactggatgtgaaaatggctgaggagtcgtcatctgcatcgtgttct
tcaaacaaaaccaaaacagtttttttggctggggttgttgggcatcatgcaaacgggctg
acgaaaactgcaggctccactaccttctccagcagcaaacctggagctgcaaagaaacta
gtcatcaagaactttaaagaaaagcccaaattgcctgagaactacacacacgagacctgg
caaaaactaaaggaggcggtcgaggccattcaaaacagcacttcaatcaagtacaatctt
gaggaactctaccaggctgtcgagaacctctgctcccataagatatctgccaggctctac
aaacagctacgggtggtttgtgaagaccacatcaaggcacaaatcgatcaattcagagag
gatgtactggacagtaccctcttcctgaagaaaatagacaactgttggcaagatcactgc
agacaaatgatcatgattagaagtatatttttgttcttggaccgcacctatgttttacaa
aactcaatgctcccatcaatctgggacatgggcctagagttgtttaggttttacataatc
agcgacatgaaggtccagagcaagaccatctacggcatcctgctgctcattgagagggag
cgcagcggcgagaccatcgaccgcagcctgctccggagcctactgagcatgctctctgac
ctacagatttatcaggactcctttgagcagcgctttctggaggagactaatcggctgtat
gctgctgagggacagcgactgatgcaggagagagaggtcccagagtatctccatcacgtc
aacaaacgcttagaggaggaagcggacagagtcatcacgtatctagaccagagcacacaa
aaacctctcattgccactgtggagaagcaactactgggtgaacatctcacttcaactctg
cagaaaggcttgaatcacctgctagatgagaacagaatccaggacttgtgtcttctctat
cagcttttcagtcgtgtgagagggggcgtactggttctcctacagcattggatcgagtac
atcaaggcctttggaagtacgatcgtcattaaccctgagaaggacaagaccatggtacag
gagctcctggacttcaaggacaaggtggaccacatcattgacatctgcttcataaagaac
gagaagtttgtcaatgccatgaaggaggcttttgagaccttcatcaacaagagaccaaac
aaacctgctgagctcatagcaaaacacgtggattcaaagcttagggcgggtaacaaggag
gcgacggacgaggagctggagaagatgttggacaagatcatgatcatcttccgattcatt
tatggcaaagatgtttttgaggccttctacaagaaagatctggccaagaggttgctggtg
ggaaagagtgcctccgtggatgccgagaagtccatgctgtcgaaactgaaacatgaatgt
ggagcagcattcaccagcaagctggaaggcatgttcaaggacatggagctttccaaggac
atcatggtgcagttcaaacagtgtcaaaacatccctggtaacattgaactgacggtgaac
atcctcaccatgggatactggcccacctacatcccaatggaggtccatctgcccgcagag
atggtgcgactgcaggagattttcaagacattttacctgggcaagcacagtggcaggaag
ctacagtggcagtcaacgttaggccattgtgttttaaaagctgaatttaaagagggcaaa
aaagagcttcaggtttccctgtttcagacgctagtgctgctcatgttcaacgaaggagag
gaattcaccttggaggagatcaagctagctacaggaatagaggacggcgagctgcgacgg
accctgcagtctttggcatgtggcaaggcacgggtcatccacaaagtccccaagagcaaa
gacgtggaggacggagacaagttctcctgcaacgatgacttcaaacacaaactcttcagg
atcaagatcaaccagatccagatgaaagaaacggtggaagagcaagccagcaccacggaa
cgagtctaccaggaccggcagtatcagatcgacgccgccatcgtccggatcatgaagatg
aggaaaactctgagccataatctcttggtgtcggaagtgtacaaccaactcaagttcccc
gtaaagcctgctgacctaaagaagagaatagagtctctcattgacagagattacatggag
cgcgacaaggagaaccccaaccaatacaactatgtagcttaa
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