Oncorhynchus kisutch (coho salmon): 109905487
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Entry
109905487 CDS
T09179
Name
(RefSeq) transcription elongation factor SPT5 isoform X2
KO
K15172
transcription elongation factor SPT5
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109905487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109905487
03019 Messenger RNA biogenesis [BR:
oki03019
]
109905487
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109905487
RNA polymerase I system
109905487
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
109905487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
109905487
NCBI-ProteinID:
XP_020358470
Ensembl:
ENSOKIG00005032205
UniProt:
A0A8C7IYE9
LinkDB
All DBs
Position
LG15:complement(54116062..54139382)
Genome browser
AA seq
1084 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEEEYDEEE
EEDDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKEEAEVSNIDHVVLDED
NSGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDPNL
WTVKCKIGEERATAIALMRKFIAYQFTETPLQIKSVVAPEHVKGYIYVESYKQTHVKAAI
DGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPS
QNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPTQRLFDAEKIRSLGGDVSHDGDFM
IFEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKEREHN
LQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVK
VIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFTV
GGFAPMSPRISSPMHPGGGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKGYIG
VVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYGTGS
RTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDDYEFGYDD
EPSPSPQGYGGTPNPQTPGYPEVLSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGSY
QPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGG
YNPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQTGIIRSVTGGMCSVFLQDTEKV
VSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLG
KLEL
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggacagcgacttctctgacaaccagagtgaacaaagcagcgaagcc
gaggaggtggacaaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgat
aaagcagcagaagaggaaggggaagacttggcagatgaggaggagtatgacgaagaggag
gaagaggatgatgatgaccgtcccagaaagaaacccaggcatggaggtttcatcttggat
gaagccgatgtggacgatgagtatgaagatgaagacccgtgggaggaaggtgctgaggat
attttggagaaagaggaagctgaggtgtccaacattgaccatgtggtcctggatgaggat
aactctggctcccgcaggctgcagaacctctggagagattccagagaggaggccttgggg
gaatattacatgaggaaatatgccaagcaatccggaaatgattttcccgggggttctgag
gaactgtctgatgacatcacccagcagcagctgctccctggtgtcaaggatcctaatctt
tggacagtcaagtgtaagattggggaagagagagcaactgccattgccttgatgaggaaa
ttcattgcctatcaattcacagaaacgcccctccaaatcaagtcggtagtggctcccgaa
catgtcaaaggttacatctatgtagagtcgtacaagcagactcacgtcaaagctgcaatt
gacggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatcaaggag
atgacagacgtcctcaaggtggtcaaagaggtgaccaacctcaagcccaagtcctgggtc
cgactcaagagaggcctatacaaagatgacatcgcccaggtggactatgtggagcccagt
caaaacacgatatcactgaagatgattcccaggatagatttggacagaatcaaggcccgg
atgagcatgaaagactggtttgcaaagcggaagaagttcaagagaccaacccagagactc
tttgatgcagaaaagatcaggtcacttggtggggatgtcagccatgatggagacttcatg
atatttgaagctaaccgctacagccgcaaagggttcctcttcaaaagctttgccatgtct
gctgtgatcactgaaggagtgaaacccactctgtcggagctggagaagtttgaggaccag
ccagaaggcattgatctggaggtggtgactgaaaccgcaggtaaagagcgtgagcacaac
ctccaggccggggacaatgtggaggtgtgtgaaggggagctgatcaacttgcagggcaaa
atcctgagtgtggatggcaacaagatcacaatcatgcccaagcatgaggacctcaaggat
cctctggagttcccggcccacgagttgaggaagtacttccgtatgggtgaccacgtcaag
gtgatagcaggccgctacgagggcgacaccggcctcatcgtacgtgtggaggagaacttt
gtcatcctcttctctgacctcaccatgcacgagttgaaggtcctgcccagagacttgcag
ctgtgctctgagacggcatcaggggtagatgccgggggccagcacgagtggggggagctg
gtccaactggacccccagaccgtgggagttattgtcaggctggagagggagacattccag
gtcctcaacatgcatggcaaggtgctgacagtgcgtcaccaggcagtgaatcgacggaaa
gacaaccgctttgccgtggcactggactctgagcagaacaatatccacgtcaaagacatc
gtcaaggtcatcgacgggccacactcggggcgtgagggggagatccgccacattttcaga
ggctttgccttcttgcactgcaagaagctggtggagaacgggggcatgtttgtctgcaag
acacgccacgtggtgctggccgggggctccaagccccgagatgtcaccaacttcactgtg
ggaggcttcgcgcctatgagtccacgcatcagcagccctatgcatccaggtggtggtggc
cagcagcagaggggcggtggaggtggaggacagatggggcgtggccggggcaggagggac
aacgacctgattggacagacagtccgcatctcccagggaccatacaaggggtatattgga
gtggtgaaggacgccacagagtcgacagccagagtggaactgcactcgacatgccagacc
atctctgtggaccgacagcgtctcaccacaatgggagccaagaggcatggaggaatgact
tccacccacggacgcacccccatgtacggttcccagacccccatgtacgggacaggctcc
cgtacccctatgtacggctctcagacccccttacacgatgggagccgtactcctcactac
ggctcgcagacgccgctgcatgatgggagcaggacgccggggcagagcggagcgtgggac
cccaataaccccaacacaccgtccagggcggatgacgactatgagtttggttatgatgac
gagccctccccgtcccctcagggctacgggggcacgcctaacccccagacccccggctac
ccagaggtgctgtcaccccaggtcaacccccagtacaacccccagacaccaggcacccca
gccatgtacaacacagaacagtactcgccgtacgctgccccctccccacagggctcgtac
cagcccagccccagtcctcagagttaccatcaggtggcacccagcccagtgggctaccag
aacacacactcaccagccagctaccaccccaccccctcacccatggcatatcaggccagt
ccgagccccagcccggtaggctacagccccatgacccccggcgccccctccccgggcggc
tacaatccccacacccccggctccaacatcgaccagacctcttgcgactgggtcaccacc
gacatcctggtgcgcgttaaagacaccttcctggacagccaggtggttaaccagacaggc
atcattcgcagtgtcacgggtggcatgtgctcagtcttcctccaggacacagagaaggtg
gtgagcatctccagtgaacacctggagcctgtcaccccaactaagaacaacaaggtgaag
gtgattctaggggaggaccgcgaggccacggggatcctactgagtatcgacggggacgac
ggcatcgtaaggatggagctggatgaccagctgaagattctcaacctccgcttccttggc
aagctggagctctga
DBGET
integrated database retrieval system
