Oncorhynchus kisutch (coho salmon): 109905567
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Entry
109905567 CDS
T09179
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03022
Basal transcription factors
oki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109905567 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
109905567 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109905567 (ercc2)
03036 Chromosome and associated proteins [BR:
oki03036
]
109905567 (ercc2)
03400 DNA repair and recombination proteins [BR:
oki03400
]
109905567 (ercc2)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109905567 (ercc2)
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109905567 (ercc2)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109905567 (ercc2)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109905567 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
AAA_11
Motif
Other DBs
NCBI-GeneID:
109905567
NCBI-ProteinID:
XP_020358589
Ensembl:
ENSOKIG00005037829
UniProt:
A0A8C7JHY5
LinkDB
All DBs
Position
LG15:57646937..57654731
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
REYPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKETGEKNNILALALSSRKNLCVHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDL
KDFGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVEGLKEANVARE
TDIYMSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD
IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISNFATLVSTYSKGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFERFQSVIITSGTLSPLDIYPRILDFRPVTVAS
FTMTLARTCLCPLVVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYTYMENIVASWYEQGILENVQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLQSEDMLQKIAQIAHQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgaagggttgttagtctatttcccatatgactatatttacccagag
caatattcctacatgctggaactcaagaggaccctggatgccaagggacatggagttctg
gagatgccatcgggaactgggaaaaccatctctcttctgtcattgattgttgcatatcag
cgggagtatccccttgaagtcacaaagctgatctactgttcccgaactgttcctgagata
gagaaggtggtggaggagttgaggaagttaatggagttctattctaaggagacgggagag
aagaacaacatcctggctctggcgctctcctctcggaaaaacctgtgtgttcaccccgag
gtgagctccttacgctttgggaaggaggtggatgggaaatgtcacagcctgacggcgtca
tacatccgtgcccaacggcacagcaacccaagcctgccttcctgccgtttctatgaggag
tttgatgctatgggaaagcaggtacctctccccgctggagtctacaatctggacgatctg
aaggactttgggcggaggaaaggctggtgcccctactacctagcacgctattcgatcctc
catgccaacatcatagtttacagttaccactacctcctggacccaaagattgcagacctt
gtctcaaaggagctctccaagaaatcagtggttgtttttgatgaagcacataacatcgac
aatgtgtgcatcgactcaatgagcgtcaacatcaccaggaggactctggaccgcagtcag
gccaacgtggagaccctacagaacaccattctcaagataaaggagacagatgcagccaaa
ctgaaagaggaatacagacgattggtggagggcctgaaagaggccaacgttgctagggag
accgacatctacatgtccaatcccgtgttgccagatgagatcctccaagaggctgtgcct
ggcagcatccgcacggcagagcactttgtgggcttcatgaagcgtttcctggagtacctg
aaggccaggctgaggattcaccacgtggtgcaggagagcgctccacagttcctcaaagac
atctttgagaaggtctgcattgaccgcaagcccctcagattctgtgccgagaggttgcgt
tcgttgctgaggactttagagatagctgacatcgcagacttctcagccatcaccctcatc
tccaactttgccactctggtcagcacttacagcaaaggcttcaccatcatcattgaaccc
tttgaagacagaacccccaccattgctaaccccgtgctgcacttcagctgtatggaccct
tccattgccatcaagcctgtgttcgagcgcttccagtctgtcatcattacgtcagggacc
ctttcaccgttggacatttacccccgaatcctggacttccggcctgttaccgtggcatcc
ttcaccatgacgctggcacgcacctgcctctgccctcttgtggtggggagggggaacgac
caggtggccatgacctccaagtttgagacacgtgaagattttgctgtcatccgtaactat
ggcaacctgctgctggagatgtctgcgattgtgccagatggcatcgtggccttctttacc
agctacacctacatggagaacattgtggcgtcgtggtatgagcagggcatcttggagaat
gtccagaggaacaagctgatcttcatcgagacaccagacgcagcagagaccagcatggct
ctggagaaataccaggaggcctgtgagaacggcagaggagccatcctgctgtctgtggcc
agggggaaggtgtccgagggtatcgactttgtccaccattttggccgtgcggtgatcatg
ttcggagtgccttacgtttacacacagagccggatcctgaaggcccgtctggagtacctg
cgggaccagttccagattagagagaatgacttcctgacgtttgacgccatgcggcacgca
gcgcagtgtgtgggccgcgccatcaggggcaaaactgactacggcttgatgatcttcgca
gacaagcgctatgcccgggctgacaagcgagggaagctgccccggtggatccaggagcac
cttactgacggcagcctcaacctgaccatcgacgagacggtacagctgtccaaacacttc
ctacgccagatggcccagcccttcagacaggaggaccagttgggcctgtctctgctgaca
ctggagcagctgcaatcagaggacatgctgcaaaagatcgcccagatcgctcaccaggcc
taa
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integrated database retrieval system
