Oncorhynchus kisutch (coho salmon): 109905720
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Entry
109905720 CDS
T09179
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03030
DNA replication
oki03420
Nucleotide excision repair
oki03430
Mismatch repair
oki03440
Homologous recombination
oki03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109905720
03420 Nucleotide excision repair
109905720
03430 Mismatch repair
109905720
03440 Homologous recombination
109905720
03460 Fanconi anemia pathway
109905720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109905720
03032 DNA replication proteins [BR:
oki03032
]
109905720
03400 DNA repair and recombination proteins [BR:
oki03400
]
109905720
Transcription factors [BR:
oki03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109905720
DNA replication proteins [BR:
oki03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109905720
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109905720
MMR (mismatch excision repair)
109905720
DSBR (double strand breaks repair)
HR (homologous recombination)
109905720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
109905720
NCBI-ProteinID:
XP_020358843
Ensembl:
ENSOKIG00005044537
UniProt:
A0A8C7KM44
LinkDB
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Position
LG15:65969770..66008982
Genome browser
AA seq
605 aa
AA seq
DB search
MLTKGAIEALTKCSNDLQNPILQLVNIRKIDGGSGQARFRLMMSDGQHSMSSFMLSTQLN
PMAEDNRLAPNCICQLKRSVTNILKDGRRVVVILDMEVVKSADEVAGKIGEPQPYVEGQS
KPPQSAPNPSVHPLQPQNGIDGSMNKGPSRAFGGKKGMPPSAMPSTPGGSSKVVPIASLN
PYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSIIET
GKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADLQAR
EKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAETFDGSG
QPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMAGQSLTEART
GGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKKVVD
QQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKD
SNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIINIRK
MASTQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaaagggagcgattgaggccctaaccaaatgctctaatgatttacaaaacccc
atacttcaattagtgaacatccgtaaaattgatggaggcagtggacaagcccgctttcgt
ctgatgatgagtgatggacagcactcaatgtcttcgttcatgctctccacccagctcaac
ccaatggctgaggacaaccgactagccccaaactgtatctgtcagctgaagaggagcgtg
accaatatcttaaaggatggacggcgtgtggtggtcatactggacatggaggtggtgaag
tctgctgatgaggtggctgggaagatcggagagccccagccttacgttgaaggtcagagt
aaacccccacagtcagcccccaatccttcagtccaccccctgcaaccccagaatggaatt
gatggctccatgaacaaaggtcccagcagagcgtttggggggaagaagggcatgcctccg
tctgccatgcccagcactcctgggggatcctccaaagttgtgcccatcgccagcctcaac
ccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggaatccgcacc
tggagcaactctcgtggggacggcaagctgttctctatggagattgtggatgagagtgga
gagatcagagtgactgcctttacccaggaggtggacaaattctacagcatcattgagact
ggcaaggtgttctacatctccaagggatccctgaagatcgccaacaagcagtactcatcc
ctgaagaatgactatgagatgaccctgaatggagagtccaccatcattccctgtgaagac
acccaggacgtacccatggtgcagtgcaacttcgtctccatcgccgacctgcaggcccga
gaaaaggacaccattttggatgtgattggagtgtgcaagagcgtgtccgacgtgacccgc
ctcaacaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatggaccagtct
ggtaaactggtggaggtcaccctgtggggagaggaggcagagacctttgatggctctggg
cagcccatcctggccatcaaaggggccaagctgtcggactatgggggcagatctctatct
gcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatacaagctgcgg
ggctggtatgacaaggagggccactctatggctggccagtctctgacggaggcgaggaca
ggtggaggaggaggagggaacaccaactggaagaccctggcagacatcaagacggagcac
cttggacacggagataaggcagactacttcagctgcatcgccaccatagtgtacatccgt
aaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaaggtggtggac
cagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaacttcaagtac
cgactcatcctctctgccaacatagcagactacggggacaaccagtgggtgacctgcttt
caggagagtgctgaagccattttgggacagaacgctgcttacctagggcagctcaaggac
tcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttcgttttc
cgtaacagagtcaagctggagacctacaatgacgagtcccggatcaaggccactgtgatg
gaggtgaaacctgtggaccacaaggagtacagcaagagactcatcataaacatcaggaag
atggcttccacccaataa
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