Oncorhynchus kisutch (coho salmon): 109905784
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Entry
109905784 CDS
T09179
Name
(RefSeq) clathrin heavy chain 1 isoform X2
KO
K04646
clathrin heavy chain
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04142
Lysosome
oki04144
Endocytosis
oki05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109905784
04142 Lysosome
109905784
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
109905784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109905784
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109905784
Membrane trafficking [BR:
oki04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
109905784
Exosome [BR:
oki04147
]
Exosomal proteins
Proteins found in most exosomes
109905784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
109905784
NCBI-ProteinID:
XP_020358969
Ensembl:
ENSOKIG00005031199
LinkDB
All DBs
Position
LG15:complement(68642570..68670291)
Genome browser
AA seq
1686 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASVL
LESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMMS
HPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFFM
KTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDLELAEELLAWFLEE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDKL
DASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQP
GFGYGM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
ccaatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagctgcaaaaaccctccagatcttcaacattgagatgaagagcaagatgaag
gctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgtggca
ctggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtcaaa
gtctttgacagacactccagcctagcaggctgtcaaatcatcaactaccgcactgacgcc
aaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtgggagcc
atgcagctgtactctgtggacaggaaggtttcccagcccattgagggccacgccgccggc
ttcgcccagttcaaaatggagggtaatacagaggaatccacactgttctgtttcgctgtc
cgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggcaat
cagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgacttc
cctgtagccatgcagatcagctctaagcaagatgttgtctttcttatcaccaaatatggc
tacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagcggg
gagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaacagg
aaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcaccaac
gtgctccagaacccagacctagccctgcgcatggccgtgcgcaacaacctggctggggcc
gaggagctgttcgccagaaagttcaacaccctgtttgctgcagggaactactctgaggct
gccaaggtggccgcaaacgctcccaagggtatcctgcgtaccccggacaccatccgtaag
ttccagagtgtgccggcccagccgggccagacctctccactgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtccta
cagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgttca
gaggagctgggggacctggtgaaatcagtggaccccactctggctctcagcgtctacctc
agggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccagaaa
attgtcctctacgccaaaaaggtgggctacactccagactggatgttcctgctccggaat
gtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggatgag
gagcccctggccgacatcacacagatcgttgacgtgtttatggagtataacctgatccag
cagtgtacctctttcctcctggatgccctgaagaacaacaggcctgctgaggggcctctg
cagacacgcctgctggagatgaacctggtccacgccccacaggtggctgatgccatcctg
ggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaaggct
ggcctgctgcagagggctctggagcattacaccgacctgtatgatatcaaacgggctgtg
gtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtcagtg
gaggactctctggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctgcag
atctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcactgag
ctctttgagtccttcaagagcttcgaaggtttgttctacttcctgggttccatcgttaat
ttcagccaggacccagaggtccacttcaagtacatccaggcagcctgtaagacgggacag
atcaaagaggtggagaggatctgcagagagagcaactgctacgaccctgaacgagtcaag
aacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgaccgc
ttcgactttgtccacgacctagtcctctacctgtaccgcaacaccctgcagaaatacatt
gagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggcgggctgctg
gatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacagttc
tccactgatgaactagtggctgaggtggagaaaaggaacagactgaagctgcttctgcct
tggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctggcc
aagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttctac
gacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtggcc
tacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctgttc
aagagtctgtctcgctacctggttcgccgtaaagatcctgagctgtgggccagcgtgctg
ctggagagtaacccgtttagaagacccctcatcgaccaggttgttcagacggccctgtct
gagacacaggacccagaggaggtgtccgtcacagtcaaggccttcatgactgcagacctc
cccaacgaactcattgagctgctggagaagatcgttctggataactcggtcttcagtgaa
cacagaaacctgcagaacttgctgatcctgacagccatcaaggcggaccgtacccgtgtg
atggagtacatcaaccgcctagacaactacgatgcccccgacatcgctaacatcgccatc
agcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacctcc
gccgtgcaggttttgattgagcacattgggaacctggaccgggcctacgaatttgctgag
cgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggtctg
gtgaaggaggccatcgactcctacatcaaggctgatgacccctctgcctacatggaggtg
ggccaggctgcagcccagagtggtaactgggaggacctagtgaagttccttcagatggcc
cgtaaaaagtcccgtgagtcctacgtggagacagagctcatcttcgccctggccaagacc
aaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaacag
gtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaacaac
gtgtccaacttcgggcggctagcgtccaccttggtccacctgggagagtaccaggccgcc
gtggatggagcccgcaaagccaacagcacccgcacctggaaagaggtgtgctttgcctgt
gtggatggaaatgagttccgcctggcacagatgtgtggcctgcatattgttgtccatgct
gatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctgggtctagagcgggctcacatgggcatgttcaccgagctg
gccatcctctactccaagtttaaaccccagaagatgagggagcacctggagctcttctgg
tccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcggag
ctggtcttcctctatgacaagtatgaggagtttgacaacgccatcctcaccatgatgagc
cacccctcagacgcctggaaggagggacagttcaaagacattgtcaccaaggtggccaat
gtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactgaac
gacctgctcatagtgctgtcaccacgactcgaccacacccgcgcagtcaacttcttcatg
aagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaacaac
aagggtgtcaacgaagcacttaacaacctcttcatcacagaggaagactatgcggccctg
cgtgcctccattgatgcctacgacaactttgacaacatcacccttgcccagggcctggag
aagcacgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaaccgc
tggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcagtat
gcgtctgagtcgaaagacctggagctggctgaggagttgttggcctggttcctggaggag
gacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcctgac
gtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctatttcatc
caggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaagctt
gacgcctccgagtccctgaggaaacaggaggagcagaacacagagtcccagcccattgtt
tatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccagcct
ggctatggaggctacggctacccagcagcacccaccggctacggccaacctccccagcct
ggctttggctatggcatgtga
DBGET
integrated database retrieval system
