Oncorhynchus kisutch (coho salmon): 109906268
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Entry
109906268 CDS
T09179
Name
(RefSeq) neurexin-2 isoform X1
KO
K07377
neurexin
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
109906268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109906268
Membrane trafficking [BR:
oki04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
109906268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_G_3
EGF
Syndecan
Motif
Other DBs
NCBI-GeneID:
109906268
NCBI-ProteinID:
XP_031648022
Ensembl:
ENSOKIG00005029395
LinkDB
All DBs
Position
LG16:complement(27424446..28441368)
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AA seq
1681 aa
AA seq
DB search
MTRGLRFPAWPLAFLSLLVTTRALEFGGAPGQWARYGRWEAGSVGELSFSLKTNISKALV
LYLDDGGNCDFMELLIAGGRLQLRFAIHCAEPATLHMETRVNDDRWHMVLLTRNFRETLL
MVDGETKVAEVKSKRKEMAVVSDLFVGGIPPDVRLSALTSSTVKYEPPFLGLISNLKVGE
MPPTLLNSQGIQSDLEYLCTKQNPCFNGGFCSIQYGEVHCDCTHTRYKGKYCKEAEEYAV
EGLAHLTLSNQGDSSQGGKEESVATFKGNEFFCYDLSLTPIQSSTDEITLSFRTLQRNGL
MLHTGKSADYVNLSLKSGAVWLVINLGSGAFEALVEPVNGKFNDNTWHDVRVTRNLRQHA
GIGHAMVTISVDGILTTTGYTQEDYTMLGSDDFFYIGGSPNTADLPGSPVSNNFMGCLKD
VVYKNNDFKLELSRLAIERDPKISLNGDLVFRCEDVAALDPVTFESPESFIALPKWNTKK
TGSISFDFRTTEPSGLLLFSHGRPQGPKEQKPGRDMKSDYFAMELLDGFLYLLMDMGSGS
IKLKTSNKKVNDGEWCHVDFQREGRKGSISVNSRSIPFNSNEGSEILDLDSDMFLGGLPE
TRSDLVLPPEVWTALLNYGYVGCVRDLFIDGKSRDVRRLAEIQSSPGVSSFCTRELQKRC
SSTPCGNGGLCKEGWNRYICDCTGTGYLGSNCELEATVLSYDGSMYLKIIIPGTMHTEAE
DVALRFMSQRAFGLLVATTSKESADTLRLELDGGRVKLTVNLDCIRIDCNLSKGPETLFA
GQKLNDNEWHMVKVVRRGKNFQLSVDNVTVEGQMTGAHTRLEFHNIETGIMTERRFISVV
PSNFIGHLQGLTVNGVPYLDQCKNGDISYCELNARFGMRHIIADPVTFRTKASYLALATL
QAYASMHLFFQFKTTTSDGLLLFNSGDGSDFIVVELVKGYVHYVFDLGNGPSLMKGNSDK
PLNDNQWHNVVVSRDANNVHTLKIDSRTVTQHSNGARNLDLKGELYIGGVGKSMYNSLPK
LIASRDGYQGCLASVDLNGRLPDLIADALHRVGQVERGCDGPSTTCTEDSCYNQGVCLQQ
WEGFSCDCTMTSYGGSFCSDPGTTYIFGRGGALITYTWPPNDRPSTRADRLAVGFSTQLK
EAVLVRVESAEGLGDYLELHIERGRIGVIFNVGTDDIAIEESAVAVSDGKYHVVRFTRSG
GNATLQVDSQPVIERFPTGNFDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQAF
IKIGGGGGDKARHFQGQISGLYYNGLQVLKLAAEGDPNVQAKGNLRLVGDVPSVLTTDTT
STTPLADMSTTIMETTTTMATTTTRKQRSPTMRDSVTQNTDDLLVASAECPSDDEDLEEC
EPGNGGELVLPIITVDSLDPPSIVTRYPVIPPPPTYRPLLPFLETTKESLPLPNGRPPCP
LDQEDCEEAGPIEVSAYGSGEMTESDDEDYYKNSPLVTDRTVLPPPPNESGIHNPHDRHF
SHRPPNSHRPPLSSTPTANPNQLGPRLNKPGGSSSKNPAGKMNTRDQVLLPPSNPSSDPD
RHRHVPGVTYPPNFPHVPTPDPTSPERGGPPGAVEVIRESSSTTGMVVGIVAAAALCILI
LLYAMYKYRNRDEGSYQVDQSRNYISNSATQSNGTLVKEKQPGTAKTTTKNKKNKDKEYY
V
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgacgagggggttgaggtttcctgcgtggcccctggcgttcctcagtctgctggtgacg
acccgggcgctggagttcggcggggcccccggccagtgggcccgctacgggcgttgggag
gcaggctcagtgggcgagctgagcttcagtctgaagaccaatataagcaaggccctggtg
ctctacctggacgacggcggcaactgcgacttcatggagctgctgatcgccggcgggcgc
ctccagctgcgcttcgccatccactgcgctgaacccgccaccttacacatggaaacccgg
gtcaacgacgaccgctggcacatggtgctcctcacacgcaacttccgcgagaccctgctc
atggtggacggcgagaccaaggtggcggaggtcaagtccaagcggaaggagatggcggtg
gtcagtgacctgtttgtgggtggcatcccgcccgacgtgcgcctctcagcccttacatcc
agcacggtgaagtacgagcccccattcctgggcctgatctccaacctgaaggtgggtgag
atgccccctaccctgctcaacagccagggcatccagagtgacctggagtatctgtgcacc
aagcagaacccctgcttcaacggaggcttctgctccatccagtatggcgaggtgcactgt
gactgcacacacacccgctacaagggaaagtactgcaaggaagcagaagagtatgctgtc
gaaggtctggcgcacctgacgttaagcaaccaaggtgactcatcgcagggcgggaaggaa
gagtcggtggccaccttcaaggggaacgagttcttctgctacgacctgtcgctgacgccc
atccagagcagcacggacgagatcacgctctccttccgcacgctgcagcgcaacggcctc
atgctgcacacgggcaagtcggccgactacgtcaacctgtcgctgaagagcggcgccgtg
tggctggtcatcaacttgggctcgggcgctttcgaggcactggtggagcccgtcaacggg
aagttcaacgacaacacctggcacgatgtgcgcgtcacccgcaacctgcgtcagcacgca
ggcattggacacgctatggtgactatatcagtggatggtattctgaccactactggttat
acccaggaggactataccatgttgggctcagatgacttcttctacattggggggagtccc
aatactgcggacctgcccggatcacccgtcagcaacaacttcatgggctgccttaaagat
gtggtgtataagaataacgacttcaagctagaactctcccggctggccatcgagcgggac
cctaagatcagcctgaacggagacctcgtcttccgctgtgaggatgtggccgccctggac
cccgtcacctttgagtcccccgagtccttcatcgccctgcccaagtggaacaccaagaaa
acaggctccatctccttcgacttccgcaccacagaacccagcggcctgctgcttttcagc
cacgggcgcccccagggtcctaaagagcagaaaccgggtcgagacatgaagtcagactat
tttgctatggagctgctggacgggttcctatacctactcatggacatggggtcagggagt
atcaagctgaagaccagtaataagaaggtgaacgacggggagtggtgccatgtggacttc
cagagggaagggaggaaaggctccatctcggtgaacagccgcagcatccccttcaactcc
aacgagggcagtgagatcctggacctggacagcgacatgttcctggggggtcttcccgag
acccgctctgacctggtgctgccccccgaggtctggacggccttgctcaactacggctac
gtgggctgcgtccgcgacctcttcatcgacggcaagagccgcgacgtgcgccgcctggcc
gagatccagagctccccgggcgtcagcagcttctgcacccgtgagcttcagaagaggtgc
agcagcaccccctgtgggaacggaggcctatgtaaagagggatggaaccgctacatctgc
gactgcaccggcaccggctacctgggcagcaactgtgaactcgaggcaacggtgctgagc
tacgacggcagcatgtacctgaagatcatcatcccggggaccatgcacaccgaggcagag
gacgtggcgctgcggttcatgtcccaacgggcattcggtctcctcgtggccaccacctcc
aaagagtccgctgacaccctgaggctagagttggacggtggcagggtcaagctgactgtc
aacctagattgtatcaggatagactgtaacctcagtaaaggacctgaaacgctcttcgct
ggccagaagctcaacgacaacgagtggcacatggtgaaagtggtgcgccgaggaaagaac
ttccagctatctgtggacaacgtcacggtggaaggccagatgacgggtgcccacacgcgg
ctggagttccacaacattgagactggcatcatgaccgagcgtcgcttcatctccgtggtg
ccctccaacttcatcggtcacctccagggcctgacagtcaacggcgtgccctacctggat
cagtgcaagaacggtgacatctcctactgtgaactcaacgcccgctttgggatgcgccac
atcatcgccgatccggtgacgtttcgaacgaaggcaagctatctagcgttggctactttg
caggcctacgcctccatgcacctcttctttcagttcaagaccaccacgtcggacggcctg
ctgctcttcaactcgggggatggcagcgacttcatcgttgtggagctggtcaaaggctac
gtccattatgtctttgacctcggcaacggcccgtcgctgatgaagggtaactcggacaag
ccgctcaacgacaaccagtggcacaacgtggtggtctcccgggacgccaacaacgtgcac
acgctcaagatcgactcccgcaccgtcacccagcactccaatggagcccgcaacctggac
ctcaaaggggagctgtacatcgggggtgtggggaagagcatgtacaacagtctgcccaag
ctgatcgcgtcccgggacgggtaccagggctgcctggcctcggtggacctcaacgggaga
ctgccagacctgatcgcagacgccctccacagggtgggccaggtggagcgaggctgcgac
ggacctagcaccacctgtacggaggactcctgctacaatcagggcgtgtgtctccagcag
tgggagggcttctcctgcgactgcaccatgacgtcctatggaggctccttctgtagcgac
cctgggacaacctacatcttcgggagaggaggagccctcatcacatacacctggcccccc
aacgaccggccgagcacacgggcagaccggctggcggtgggattcagcacgcagctgaag
gaggccgtgctggtcagggtggaaagcgcagagggactgggagactacctggagctgcac
atagaacgaggaaggatcggcgtcatcttcaacgtgggaacggacgacatcgccatcgag
gagagtgcagtggcggtgagcgacggcaaataccacgtggtgcgcttcacgcgcagcggc
ggcaacgctaccctgcaggtggacagccagcccgtcatcgaacgcttccccacagggaac
tttgataatgagcgcctggctattgctagacaaagaatcccataccgacttggtcgggta
gttgacgagtggctactcgacaaaggtcgacagttgaccatcttcaacagccaggcgttc
atcaagatcggtggtggtggcggcgacaaggcccgtcacttccagggccagatctcgggc
ctctactacaacgggctgcaggtgctcaagctggcggccgagggcgaccccaacgtgcag
gccaagggcaacctgcggctggtgggcgacgtgccctcggtgctcaccacagacaccacc
agcaccacgccgctggccgacatgtccaccaccatcatggagacaaccacgaccatggct
accaccaccacccgcaagcagcgttcacccaccatgagggacagtgtcacacagaacacg
gatgatctgttggtagcatctgctgagtgtcccagcgatgacgaggacttggaggagtgc
gagcctggaaatggaggtgaattagtgttgcccataataacggtggactccctagacccc
ccatccatcgtcacccgctaccctgtaatccccccgccccccacctaccggcccctccta
cccttcctcgaaacgaccaaagagtccctccccctgcccaacggtcgccccccctgccca
ctggaccaggaggactgcgaggaggcgggacccatcgaggtgtccgcctacggctcgggt
gagatgaccgagtcggacgacgaggactattacaaaaactcccccctcgtcaccgacagg
acggtcctcccccctccccccaatgagagtggcatccataacccccacgaccgtcacttc
tcccaccggccccccaactcccaccgcccccctctgtcctccacccccacagccaacccc
aaccagctaggccccaggctcaacaagcccggcggcagcagcagcaaaaaccccgctggc
aagatgaacacccgggaccaggtgctgctgccgccctccaacccctcctcagaccctgac
cgccaccgccacgtcccaggcgtaacctaccctcccaatttcccccatgtgcccacccca
gaccccacctccccagagagaggagggcctcccggcgcagtagaagtaatcagggagtcc
agcagcaccacgggcatggtggtaggcatcgtggcggccgctgccctctgcatcctcatc
ctgctctacgccatgtataagtaccgtaaccgggacgagggatcctaccaggtagaccag
agccgaaactacatcagtaactcggccacgcagagcaacggcaccctggtgaaggagaaa
cagccgggcacagccaagacaaccaccaagaacaagaagaacaaagacaaggagtactac
gtctga
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integrated database retrieval system