Oncorhynchus kisutch (coho salmon): 109906287
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Entry
109906287 CDS
T09179
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04382
Cornified envelope formation
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04518
Integrin signaling
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109906287
04518 Integrin signaling
109906287
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109906287
09142 Cell motility
04820 Cytoskeleton in muscle cells
109906287
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109906287
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109906287
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109906287
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109906287
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109906287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109906287
NCBI-ProteinID:
XP_020359499
Ensembl:
ENSOKIG00005005632
LinkDB
All DBs
Position
LG15:complement(45214147..45376032)
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AA seq
1674 aa
AA seq
DB search
MTVSTCCTTWTKLPLWWLVIMVVAGQAVMGGDQPEGLCGGRDCSTCQCFPAKGAQGVPGV
LGRQGPQGPPGFPGPQGPLGEKGYRGDEGFPGVSGPKGDVGIAGVPGYPGLDGVPGHPGT
GGVPGLPGLDGCNGTRGDSGFPGIHGLDGPDGGAGFSGIKGVPGDPTVQFIQYPGIPGDV
GRAGVTGLPGFQGISGPRGPTGPVGLDGSDGLTGSPGLRGPPGEKGRSLPGQKGDEGDQG
TQGPPGPFEFVDPPEDFYIKGSKGRSGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRG
LPGYPGFPGPPGVKGILGSPGLPGLIGTEGPKGFQGDLGPKGLTEFRQVNYTACRGIPGE
SGLPGRPGPPGDVGEMGMHGRQGLPGVSIPGTNGEPGPIGMTGTKGVKGEPGMHYQNGPT
PGEPGKPGTAGLSGLKGERGPPGCGGTYCTPGSPGEPGADGDQGPPGSAGFPGSKGIDGD
CDCELLQPSKGDPGFMGIPGLPGLRGLCGAPGPRGDIGFPGDIGRSGADGFPGFAGVRGP
KGQKGDVYLCIKGVKGDIGLPGLAGRPGFTGRRGDEGNPGVPGDAGPEGDSYSGFPGERG
YPGNDGPKGLAGPVGPPGPDVIGAVGERGLPGDQGPPGFRGSPGLKGVRGDTLPCIPSNP
GAPGQKGDSGSPGLNGESGPPGYLGALGPDGVKGEKGDFGLSGPPGPIGSSGCIGDSGEA
GAEGLSYDGAAGSPGFRGSPGLKGPFGDSVPGAPGPTGLKGVLGLSGPKGVPGPPGPIGL
TGAAGLPGTPGRKGEQGESGATGRYGAPGPTPEQCEEGAPGLQGIMGLIGDIGPPGYAGE
KGDNGEEGLSGTGPKGAAGKPGSPGFPGYLGAQGPVGPLGDPGIPGAQGQKGIIGVPGRD
GSVGGPGRSGALGSPGRKGERGFDGQRGLPGDEGLKGEKGRKGAPGDTGDTNFIPIKGLP
GAPEPPGLDGFTGPRGDKGPAGGRGLPGYPGLLGGPGIEAGPQGPPGTCGRSGEPGLPGL
PGQRGIIGFPGEIGDQGESGCTGSPGTPGFPGYSGLKGERGDSIGIPGPAGDRGATGDTG
AFAAPGDQGDVGEPGVSGAPGPKGLTGPQGSIGPPGPAGVIGPPGLSGKPGADGLPGTSG
QTGPKGDQGPLGLKGPPGPLGLHGLDGLKGVKGEVGARGPGVPGPSGAPGYKGEKGSRGC
QGPQGPSQPGPLGPKGQSGLTGSPGDTGASGLPGMDCKESMPGHCGESGFPGRDGPPGTP
GDIGCSGPALPMTSEEGDNGVPGLPGLKGDKGTSGPPGLPGIAGLPGPKGERGASGMMGV
PGHPGSTGTCGPPGPKGTEGLQGDEGPKGEKGNVITPLIIPPPPGPVGAPGQPGLPGFTG
GPGSNGFEGQKGRSGQLGSPGFPGPEGPPGADGAPGDSGVQGERGALGPQGAPGPLGDAG
SPGPTTTFNSGFLLVMHSQSDMLPSCPADMTQLWTGYSLLYLEGQEKAHTQDLGQAGSCM
RLFSTMPFSFCNMGTCDYASRNDKSYWLSTTASVPMMPVADQDIQQHISRCVVCEAPSPA
VAVHSQDNSNPFCPPNWRSLWVGYSFLMHTGAGDEGGGQSLTSSGSCLRDFRSQPFVECQ
GPRGTCHYFANIYSFWLTRVGADGPLSSSTSQGTLKEEWQQRLNVGRCNVCMKE
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgacggtctctacctgctgcaccacctggaccaaactccctctctggtggcttgtgata
atggtcgttgctggacaggccgtaatggggggggaccaaccggagggactctgtgggggg
cgggactgctccacctgccagtgtttccctgctaaaggagcccagggtgttccaggagtt
ttaggacgacaggggcctcaggggccacctgggttcccgggcccccaggggcctcttgga
gagaagggatatcgaggagatgagggcttccctggcgtatctggaccgaagggagacgtg
ggtattgctggcgtaccaggatatcctggactagatggtgtcccgggtcacccagggaca
ggaggtgttcctggtctaccagggcttgatggctgtaacgggaccagaggggactctggt
ttccctggaatccatggtctggatgggcctgatgggggagcgggtttctcagggatcaaa
ggagtgccaggggaccccaccgttcagttcatccagtaccctggtatacctggtgatgtc
ggccgtgctggggttactggactgcctggcttccaaggcattagcggccctaggggacct
actggaccagttggtttggatggatcagatggtttaactggttcacctggcctgagaggt
ccgcctggagagaaaggaagatcattgccaggacagaaaggagatgaaggagaccagggt
acccaagggcccccaggaccctttgagtttgtggaccccccagaagacttctacatcaaa
ggaagcaaggggaggagtggtgtgaagggagagtgtggacccaggggaagtgatggattc
gactcgttgacagggataaaaggagaaaagggaatcatcggatttcctggagtcaggggt
cttcctggatatcctggcttccctgggccacctggtgtaaaggggatcctcgggagccct
ggcctacctggtctgataggaacggagggacccaaggggttccaaggagatcttggtccc
aaaggactgacagagttcaggcaggttaattatacagcttgtagagggataccaggggag
tcggggctgcctggaagaccaggaccacctggagatgttggggagatggggatgcacggc
cgccaaggactgcctggggtatcaatacctggtaccaatggtgagcctggcccaataggg
atgactggcaccaagggggttaaaggagagccagggatgcactaccagaacgggcctaca
cccggagagcctggtaaaccgggcacagcaggcctcagtggtctgaaaggagagcgcggc
cccccaggttgtggaggtacgtactgcacccctggttcaccaggagagcctggagcagat
ggagatcaaggtcctcctggatctgcagggttccctggtagcaaaggaattgatggtgat
tgtgattgtgagctcctccagccttcaaagggagaccctggctttatggggattccggga
ttgccagggttacgaggactttgtggggcaccaggcccgaggggtgacattggttttccc
ggagacataggaagaagtggggcagacggcttcccaggatttgcaggtgtccggggtcca
aaaggtcagaaaggtgacgtctatctatgcattaaaggtgtgaagggagacattggcctc
ccggggctggctggtcgtccaggcttcactgggaggagaggagacgaagggaatccgggt
gtgcctggtgacgctggcccagagggtgacagttactcaggattcccgggcgagagaggg
tatccaggtaatgacgggccaaaagggcttgctggacccgtcggccccccaggacctgat
gtgattggggcagtgggagaacggggactcccaggcgaccagggacctccaggattcagg
ggatctcctgggctcaaaggagtcaggggtgacaccctaccctgcatacccagtaaccct
ggtgccccaggacagaaaggcgattccggaagcccagggctgaacggagagtcaggaccc
ccagggtatcttggagctttgggcccagacggggtgaagggagagaaaggagactttgga
ctgtctggcccacctggacccataggctcgtcggggtgtattggagactctggagaggct
ggtgctgagggtctgagctacgacggagctgccggctctcctggcttccgagggtctcca
ggactgaagggcccatttggggactctgtccctggtgctccaggacctacaggcctcaag
ggcgtactgggtctgtcggggcccaaaggagtgccaggtccacccggtccaattggatta
acaggtgctgcggggcttcctggtacaccgggaaggaagggggagcagggagagagtggt
gccacaggcagatatggggccccagggcccacccctgaacagtgtgaagagggggcccca
ggccttcaaggaatcatgggactaataggggacataggccctccaggttacgcaggcgag
aagggtgataacggagaggagggtctgtccggcacgggtcctaaaggagctgcagggaaa
ccgggctctccagggtttcctgggtaccttggagcccagggccccgtggggccattagga
gaccctggcatacccggggctcaagggcagaaaggtataataggagtacctggtagggat
gggtcagtgggtggtccagggaggagtggagcactaggatccccgggaaggaaaggagag
aggggctttgacggtcaacgaggcttaccaggagatgagggcctcaaaggagaaaagggt
agaaaaggtgcccccggagacacaggagacaccaacttcattccgatcaaaggactacca
ggagctcccgaacccccaggtctggatggcttcactggtccaagaggtgacaagggtcct
gcgggaggcaggggtctaccagggtacccagggcttttgggggggcctggcatagaggct
gggcctcaaggtccacctggtacatgtggacgctcaggtgaacctggactacctggcctg
cctggccagaggggtatcataggcttccctggagagattggtgatcagggtgaatctggg
tgtactggatctcctggcacacctggcttcccagggtacagtggtcttaaaggtgaacgg
ggcgactccattggcatccctggaccggctggtgatagaggagctacaggagacactgga
gcatttgccgcaccgggtgaccaaggtgatgtaggtgaaccaggagtttcaggagctcca
ggacctaaagggttaactggtcctcaaggatccatcggacctccagggcctgctggtgtg
atcggacccccaggcctgagtggtaaacctggggctgatggtctcccagggacctctgga
caaactgggcccaagggagaccaaggaccacttggactcaaaggtccacctggaccactg
ggtttgcatggactggacggactaaagggtgtgaagggagaggttggggccagaggccca
ggtgtgcccggtccctccggtgctccaggctataaaggagagaagggttccagagggtgt
caagggcctcaggggccctctcagccaggacctctgggccccaagggccagtctggacta
acgggaagcccaggagacacaggtgcctccggtctaccaggcatggactgtaaggagtcc
atgcccggccactgtggggagtcaggcttccctggacgcgacggaccaccaggtacacca
ggtgacattggctgctccggccctgctctgcccatgaccagtgaagagggggacaacggt
gtgcccggcttaccagggctcaaaggggacaaggggacttcaggcccccccgggctgcct
ggcattgcagggttacctgggcctaaaggtgagagaggagcttcggggatgatgggggtc
ccaggacaccccggttccacaggaacatgtgggcccccaggacccaaaggaaccgaggga
ctgcaaggagatgaaggtccaaaaggagaaaaggggaatgtgatcactccattgataatc
ccacctcctcctggacccgtaggcgcacccggtcaaccaggccttcctggcttcactggc
ggcccgggatccaacggttttgagggacagaaagggagaagtggccagttgggttcacca
ggattcccggggcccgagggccccccaggagcagacggggccccaggggacagtggggta
cagggggagaggggggcattgggaccacagggcgccccaggtcctttgggagatgccggc
agcccaggccccaccaccacctttaactctggcttcctgttggtgatgcacagccaatca
gacatgctcccttcctgtccagcagacatgacacaactgtggactggctacagtttgctg
tacctggagggccaagagaaagcccacacacaggacctcggtcaggctgggtcatgtatg
cgtctcttcagcaccatgccgttctccttttgcaacatgggcacgtgtgactacgccagc
cgcaatgacaagtcctactggttgtccaccacagcgtcagtgcccatgatgcccgtggcg
gaccaggacatccaacaacacatcagccgctgcgtggtgtgtgaggccccctcccctgct
gtggcagttcacagccaggacaacagcaatcccttctgtccccccaactggaggagtctt
tgggtaggatactccttcctcatgcacacaggggccggcgatgagggtggtggccagtct
ctgacatcatcaggaagctgcctgagggacttccgttcccagccgttcgtggaatgccag
ggcccgcggggtacgtgccactacttcgccaacatctacagcttctggttgacccgggtg
ggcgcagatggaccgctgagctcctctacttcacagggaacgctcaaagaggagtggcaa
cagcgcctcaacgtgggccggtgcaacgtgtgtatgaaggagtga
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integrated database retrieval system
