Oncorhynchus kisutch (coho salmon): 109906287
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Entry
109906287 CDS
T09179
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109906287
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109906287
09142 Cell motility
04820 Cytoskeleton in muscle cells
109906287
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109906287
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109906287
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109906287
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109906287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109906287
NCBI-ProteinID:
XP_020359499
Ensembl:
ENSOKIG00005005632
LinkDB
All DBs
Position
LG15:complement(45214147..45376032)
Genome browser
AA seq
1674 aa
AA seq
DB search
MTVSTCCTTWTKLPLWWLVIMVVAGQAVMGGDQPEGLCGGRDCSTCQCFPAKGAQGVPGV
LGRQGPQGPPGFPGPQGPLGEKGYRGDEGFPGVSGPKGDVGIAGVPGYPGLDGVPGHPGT
GGVPGLPGLDGCNGTRGDSGFPGIHGLDGPDGGAGFSGIKGVPGDPTVQFIQYPGIPGDV
GRAGVTGLPGFQGISGPRGPTGPVGLDGSDGLTGSPGLRGPPGEKGRSLPGQKGDEGDQG
TQGPPGPFEFVDPPEDFYIKGSKGRSGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRG
LPGYPGFPGPPGVKGILGSPGLPGLIGTEGPKGFQGDLGPKGLTEFRQVNYTACRGIPGE
SGLPGRPGPPGDVGEMGMHGRQGLPGVSIPGTNGEPGPIGMTGTKGVKGEPGMHYQNGPT
PGEPGKPGTAGLSGLKGERGPPGCGGTYCTPGSPGEPGADGDQGPPGSAGFPGSKGIDGD
CDCELLQPSKGDPGFMGIPGLPGLRGLCGAPGPRGDIGFPGDIGRSGADGFPGFAGVRGP
KGQKGDVYLCIKGVKGDIGLPGLAGRPGFTGRRGDEGNPGVPGDAGPEGDSYSGFPGERG
YPGNDGPKGLAGPVGPPGPDVIGAVGERGLPGDQGPPGFRGSPGLKGVRGDTLPCIPSNP
GAPGQKGDSGSPGLNGESGPPGYLGALGPDGVKGEKGDFGLSGPPGPIGSSGCIGDSGEA
GAEGLSYDGAAGSPGFRGSPGLKGPFGDSVPGAPGPTGLKGVLGLSGPKGVPGPPGPIGL
TGAAGLPGTPGRKGEQGESGATGRYGAPGPTPEQCEEGAPGLQGIMGLIGDIGPPGYAGE
KGDNGEEGLSGTGPKGAAGKPGSPGFPGYLGAQGPVGPLGDPGIPGAQGQKGIIGVPGRD
GSVGGPGRSGALGSPGRKGERGFDGQRGLPGDEGLKGEKGRKGAPGDTGDTNFIPIKGLP
GAPEPPGLDGFTGPRGDKGPAGGRGLPGYPGLLGGPGIEAGPQGPPGTCGRSGEPGLPGL
PGQRGIIGFPGEIGDQGESGCTGSPGTPGFPGYSGLKGERGDSIGIPGPAGDRGATGDTG
AFAAPGDQGDVGEPGVSGAPGPKGLTGPQGSIGPPGPAGVIGPPGLSGKPGADGLPGTSG
QTGPKGDQGPLGLKGPPGPLGLHGLDGLKGVKGEVGARGPGVPGPSGAPGYKGEKGSRGC
QGPQGPSQPGPLGPKGQSGLTGSPGDTGASGLPGMDCKESMPGHCGESGFPGRDGPPGTP
GDIGCSGPALPMTSEEGDNGVPGLPGLKGDKGTSGPPGLPGIAGLPGPKGERGASGMMGV
PGHPGSTGTCGPPGPKGTEGLQGDEGPKGEKGNVITPLIIPPPPGPVGAPGQPGLPGFTG
GPGSNGFEGQKGRSGQLGSPGFPGPEGPPGADGAPGDSGVQGERGALGPQGAPGPLGDAG
SPGPTTTFNSGFLLVMHSQSDMLPSCPADMTQLWTGYSLLYLEGQEKAHTQDLGQAGSCM
RLFSTMPFSFCNMGTCDYASRNDKSYWLSTTASVPMMPVADQDIQQHISRCVVCEAPSPA
VAVHSQDNSNPFCPPNWRSLWVGYSFLMHTGAGDEGGGQSLTSSGSCLRDFRSQPFVECQ
GPRGTCHYFANIYSFWLTRVGADGPLSSSTSQGTLKEEWQQRLNVGRCNVCMKE
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgacggtctctacctgctgcaccacctggaccaaactccctctctggtggcttgtgata
atggtcgttgctggacaggccgtaatggggggggaccaaccggagggactctgtgggggg
cgggactgctccacctgccagtgtttccctgctaaaggagcccagggtgttccaggagtt
ttaggacgacaggggcctcaggggccacctgggttcccgggcccccaggggcctcttgga
gagaagggatatcgaggagatgagggcttccctggcgtatctggaccgaagggagacgtg
ggtattgctggcgtaccaggatatcctggactagatggtgtcccgggtcacccagggaca
ggaggtgttcctggtctaccagggcttgatggctgtaacgggaccagaggggactctggt
ttccctggaatccatggtctggatgggcctgatgggggagcgggtttctcagggatcaaa
ggagtgccaggggaccccaccgttcagttcatccagtaccctggtatacctggtgatgtc
ggccgtgctggggttactggactgcctggcttccaaggcattagcggccctaggggacct
actggaccagttggtttggatggatcagatggtttaactggttcacctggcctgagaggt
ccgcctggagagaaaggaagatcattgccaggacagaaaggagatgaaggagaccagggt
acccaagggcccccaggaccctttgagtttgtggaccccccagaagacttctacatcaaa
ggaagcaaggggaggagtggtgtgaagggagagtgtggacccaggggaagtgatggattc
gactcgttgacagggataaaaggagaaaagggaatcatcggatttcctggagtcaggggt
cttcctggatatcctggcttccctgggccacctggtgtaaaggggatcctcgggagccct
ggcctacctggtctgataggaacggagggacccaaggggttccaaggagatcttggtccc
aaaggactgacagagttcaggcaggttaattatacagcttgtagagggataccaggggag
tcggggctgcctggaagaccaggaccacctggagatgttggggagatggggatgcacggc
cgccaaggactgcctggggtatcaatacctggtaccaatggtgagcctggcccaataggg
atgactggcaccaagggggttaaaggagagccagggatgcactaccagaacgggcctaca
cccggagagcctggtaaaccgggcacagcaggcctcagtggtctgaaaggagagcgcggc
cccccaggttgtggaggtacgtactgcacccctggttcaccaggagagcctggagcagat
ggagatcaaggtcctcctggatctgcagggttccctggtagcaaaggaattgatggtgat
tgtgattgtgagctcctccagccttcaaagggagaccctggctttatggggattccggga
ttgccagggttacgaggactttgtggggcaccaggcccgaggggtgacattggttttccc
ggagacataggaagaagtggggcagacggcttcccaggatttgcaggtgtccggggtcca
aaaggtcagaaaggtgacgtctatctatgcattaaaggtgtgaagggagacattggcctc
ccggggctggctggtcgtccaggcttcactgggaggagaggagacgaagggaatccgggt
gtgcctggtgacgctggcccagagggtgacagttactcaggattcccgggcgagagaggg
tatccaggtaatgacgggccaaaagggcttgctggacccgtcggccccccaggacctgat
gtgattggggcagtgggagaacggggactcccaggcgaccagggacctccaggattcagg
ggatctcctgggctcaaaggagtcaggggtgacaccctaccctgcatacccagtaaccct
ggtgccccaggacagaaaggcgattccggaagcccagggctgaacggagagtcaggaccc
ccagggtatcttggagctttgggcccagacggggtgaagggagagaaaggagactttgga
ctgtctggcccacctggacccataggctcgtcggggtgtattggagactctggagaggct
ggtgctgagggtctgagctacgacggagctgccggctctcctggcttccgagggtctcca
ggactgaagggcccatttggggactctgtccctggtgctccaggacctacaggcctcaag
ggcgtactgggtctgtcggggcccaaaggagtgccaggtccacccggtccaattggatta
acaggtgctgcggggcttcctggtacaccgggaaggaagggggagcagggagagagtggt
gccacaggcagatatggggccccagggcccacccctgaacagtgtgaagagggggcccca
ggccttcaaggaatcatgggactaataggggacataggccctccaggttacgcaggcgag
aagggtgataacggagaggagggtctgtccggcacgggtcctaaaggagctgcagggaaa
ccgggctctccagggtttcctgggtaccttggagcccagggccccgtggggccattagga
gaccctggcatacccggggctcaagggcagaaaggtataataggagtacctggtagggat
gggtcagtgggtggtccagggaggagtggagcactaggatccccgggaaggaaaggagag
aggggctttgacggtcaacgaggcttaccaggagatgagggcctcaaaggagaaaagggt
agaaaaggtgcccccggagacacaggagacaccaacttcattccgatcaaaggactacca
ggagctcccgaacccccaggtctggatggcttcactggtccaagaggtgacaagggtcct
gcgggaggcaggggtctaccagggtacccagggcttttgggggggcctggcatagaggct
gggcctcaaggtccacctggtacatgtggacgctcaggtgaacctggactacctggcctg
cctggccagaggggtatcataggcttccctggagagattggtgatcagggtgaatctggg
tgtactggatctcctggcacacctggcttcccagggtacagtggtcttaaaggtgaacgg
ggcgactccattggcatccctggaccggctggtgatagaggagctacaggagacactgga
gcatttgccgcaccgggtgaccaaggtgatgtaggtgaaccaggagtttcaggagctcca
ggacctaaagggttaactggtcctcaaggatccatcggacctccagggcctgctggtgtg
atcggacccccaggcctgagtggtaaacctggggctgatggtctcccagggacctctgga
caaactgggcccaagggagaccaaggaccacttggactcaaaggtccacctggaccactg
ggtttgcatggactggacggactaaagggtgtgaagggagaggttggggccagaggccca
ggtgtgcccggtccctccggtgctccaggctataaaggagagaagggttccagagggtgt
caagggcctcaggggccctctcagccaggacctctgggccccaagggccagtctggacta
acgggaagcccaggagacacaggtgcctccggtctaccaggcatggactgtaaggagtcc
atgcccggccactgtggggagtcaggcttccctggacgcgacggaccaccaggtacacca
ggtgacattggctgctccggccctgctctgcccatgaccagtgaagagggggacaacggt
gtgcccggcttaccagggctcaaaggggacaaggggacttcaggcccccccgggctgcct
ggcattgcagggttacctgggcctaaaggtgagagaggagcttcggggatgatgggggtc
ccaggacaccccggttccacaggaacatgtgggcccccaggacccaaaggaaccgaggga
ctgcaaggagatgaaggtccaaaaggagaaaaggggaatgtgatcactccattgataatc
ccacctcctcctggacccgtaggcgcacccggtcaaccaggccttcctggcttcactggc
ggcccgggatccaacggttttgagggacagaaagggagaagtggccagttgggttcacca
ggattcccggggcccgagggccccccaggagcagacggggccccaggggacagtggggta
cagggggagaggggggcattgggaccacagggcgccccaggtcctttgggagatgccggc
agcccaggccccaccaccacctttaactctggcttcctgttggtgatgcacagccaatca
gacatgctcccttcctgtccagcagacatgacacaactgtggactggctacagtttgctg
tacctggagggccaagagaaagcccacacacaggacctcggtcaggctgggtcatgtatg
cgtctcttcagcaccatgccgttctccttttgcaacatgggcacgtgtgactacgccagc
cgcaatgacaagtcctactggttgtccaccacagcgtcagtgcccatgatgcccgtggcg
gaccaggacatccaacaacacatcagccgctgcgtggtgtgtgaggccccctcccctgct
gtggcagttcacagccaggacaacagcaatcccttctgtccccccaactggaggagtctt
tgggtaggatactccttcctcatgcacacaggggccggcgatgagggtggtggccagtct
ctgacatcatcaggaagctgcctgagggacttccgttcccagccgttcgtggaatgccag
ggcccgcggggtacgtgccactacttcgccaacatctacagcttctggttgacccgggtg
ggcgcagatggaccgctgagctcctctacttcacagggaacgctcaaagaggagtggcaa
cagcgcctcaacgtgggccggtgcaacgtgtgtatgaaggagtga
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