Oncorhynchus kisutch (coho salmon): 109906396
Help
Entry
109906396 CDS
T09179
Name
(RefSeq) rho guanine nucleotide exchange factor 11-like isoform X1
KO
K12331
Rho guanine nucleotide exchange factor 11
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
109906396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109906396
Membrane trafficking [BR:
oki04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
109906396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
RhoGEF
PH_16
PDZ
PDZ_6
RGS
PDZ_2
Pept_S41_N_bact
WDCP
Rep_fac-A_C
Motif
Other DBs
NCBI-GeneID:
109906396
NCBI-ProteinID:
XP_031647736
Ensembl:
ENSOKIG00005037674
LinkDB
All DBs
Position
LG16:complement(16798733..16839317)
Genome browser
AA seq
1462 aa
AA seq
DB search
MDALEPSAAMSLRTPTSTLDSPFAAWLSSLTIGDSERNTSSGQQGEPPADIPPENTGPGL
VQRCVVVQKDQLGFGFTVCGERIKLVQNVRPGGAAVKAGVHEGDRIIKVNGSLVSSMSHQ
EVVKLIKSGPYVALTLQGPPPSAAALVLQPLPADLLPNQRTSLGGEAPPPPPPPLPPGLT
STPSQRINKPLQNLDVQKHATQILRNMLEQGEAELQDLMEELSRNPSPSLEERIDSAKRR
TQQVRVKIKQDLDGTRPEAVSNYVIAGDARLSVDSSEGDFETCESPHSSPSFFRTPLRWR
QGSDTHTFSDSAGKTQIIGPEEEEEEDNSYALNEMDGPFQDIELLKSRPAHMTVFMRYVF
SQLLDPNPLLFYLSVEAYLGSSPKDARALAPQICSHFLDPDAPLKIRVREEYLADIESRL
HAQEDIRGPLSELQQQVLPDIQDQIQDYRNKQMMGLGSLFGEGDLQQLDGDPAKEKQVVD
RQVTALWEILSKHEDDRSSPLASAVLLYLRHSGIKLRDSRVFPGLSTEKEKWLAFFPKTK
KLSSAKKEKDGEDRKRNPILKYIGKPRSTSQSTFHVPLSPTEVRPGSVRNIIQQFENHPE
IPGEEGDEGDLQRLSSSSLGKDSMDSPMVSVRLARSESLKAQGEGRRRGGASGVETVPRS
RSDVDMEDCGEEIDGPGLRPLHHSASSSATSSSARSLENPTPPYTPRSSRRQFEESPVAL
LPDAPALEDDVVESHNWQETVAPQVLATLCPREVDRQAVIYELLTTEASHLRTLRVLDQV
FFQKMRCVLSSDELACIFPNLPQVYQLHVSLCEAMKKKRESPIVQGIGDIMLARFEGVAG
EEFQEQASHLCSQQSQALELIKNKQRKDPRFTHIIQECEASPHCRRLQLKDLLVSETQRL
TKYPLLLDNIIKHTEAGCTDLPPLQRAQACCRGILQAVNEVVRETEHRQRLNQYQRRLDP
TPQFKSLDLTSKTMIHEGPLTWKVNKDKTLEIQALLLSDLLVLLQRGPDDRLLLRCPSRW
LGGGGGSGDTKASFSPVVQLDSLLVRSVATDNKALYVISTTERKIYELVAGTSSEKNIWK
DQLEKTISLVAGSSPSTNNRSTPIFSPSLGNASPVSTGSHVYQSDDSMTEQVVFMETDSP
NDEDNELARTTPTDQSGAFFCGEGQDYVKRRIGVAEAALEDVETLRQLIFRDLEDGWSHG
SDGTHTNEAANERTPFNDHQRPPSSETLLSVSPSQWGAEHAEAPPSEVECPSVHVVRKAV
VAGSPIPDDITEDVTLHSDQSPEPRGEASVRGNVFYLVMPTEQGEGLLDESHTDEVNDPT
TTELPDLEQEVISSPVQTHEKEGQVASIMSADNQSERGNLSRQEGQSQSQKSLQSHIIKN
VDDIFHTIEELMRKLHQLRDIETAHHQLLKTLREPPVNPESGDLFHIQATVVRTPFLDRD
PGDGKEASPAEPAKLKILSTGF
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgctcgagccgtctgcagccatgagtctccgcacccccacctcaacactggac
agcccttttgctgcttggctaagcagcctgacgataggagactcggagcgcaacacctcc
agcggccagcagggggagcctccagctgacatcccccctgagaacacaggtccaggtctg
gttcagagatgtgtggtggtacagaaagaccagctggggtttggcttcaccgtgtgtggc
gagaggatcaagctggtgcagaatgtccgaccaggtggtgcagcagtcaaggcaggggtc
cacgagggagacagaatcattaaggtgaacggctcgctggtgtcgtccatgtctcaccag
gaggtggtgaagctcatcaagtctgggccgtatgttgccctgacacttcaaggaccgccc
ccttcagcagccgccctcgtcctacaacccctccccgctgacctcttacccaatcagagg
acgtcactgggaggtgaagccccgccaccaccacctccacccctgccccccggacttacc
agcaccccctcccaaagaatcaacaaaccactacagaacctagatgtacagaaacacgcc
actcagatcctcaggaacatgttggaacagggagaggctgagctccaggacttgatggag
gagctgtcacggaacccctccccatcactggaggagcgaatcgatagtgccaagaggcgc
acccaacaagtgcgggttaaaatcaagcaagatctggatggaactcgccccgaagctgtg
tccaactatgtaatagcaggagatgctcggctgtcggtggactcaagtgaaggagacttt
gagacctgtgagagcccccactcctccccctccttcttcaggacccccctacgctggaga
cagggctccgacacacacaccttctctgactcggctgggaagactcagatcattggcccc
gaggaagaggaggaagaggacaacagctatgcactcaatgagatggacggtccatttcag
gacatagagcttctcaagtcgagaccggcccatatgacggtgttcatgagatatgtcttc
agccagctactggatcccaacccactgctgttctacctgtcggtggaggcctacctgggc
tccagccctaaagacgcccgtgccctcgctcctcagatctgctcccacttcctggaccct
gacgctccgttaaaaatcagagtacgagaagagtacctggctgatatagagagtcgtctc
catgcccaggaggacatcaggggaccactgtctgagctccaacagcaggtgctacctgac
attcaggaccaaatacaggactacaggaacaagcagatgatgggtctgggctctctgttt
ggagagggagacctgcagcagctggatggagacccagccaaggagaaacaggtggtggac
agacaggtcactgctctctgggagatactctcgaagcacgaagacgacagaagttctcct
ctagcctctgcggtgctgttgtacctccgtcactcgggcattaagctgagggactccagg
gtgtttccagggctcagcactgagaaggagaagtggctcgcctttttccccaagaccaag
aagctgagcagtgcaaagaaagaaaaggatggagaggacaggaagagaaaccccatcctg
aagtatatcggcaagcccaggagcacctcccagtccacgttccatgtccccttgtctccc
actgaagtgcgtcctggcagtgtgaggaacatcatccagcagtttgagaaccacccagag
atccccggggaggagggggacgagggagacctccagagactgtcctccagcagcctggga
aaggacagtatggacagccctatggtgtcggtgcgtctggctcgtagtgagtctctgaag
gcgcagggggaggggcgtcggcggggcggggcttcaggagtggagacagtccctcgttcc
cgtagcgacgtggacatggaggactgtggggaggagatagatgggccgggcctgagaccc
ctacaccacagcgcctcctcctcagccaccagtagctcagcacgatccttggagaacccc
acgcctccatacacccctcggtcgtctagacgacagtttgaggagtccccggtggccctg
ctccctgatgccccagccctagaggacgacgtggtggagagtcacaactggcaagagaca
gtggcccctcaggtcctggctacactctgtccccgagaggtggaccgacaggccgtcatt
tacgagttgttgacgacagaggcgtctcacctgcgtactctcagggtcttggatcaggtg
tttttccagaagatgaggtgtgttctgagctctgacgagctggcctgcatcttccccaac
ctgcctcaggtctaccaactacatgtgagcctgtgtgaagccatgaagaagaaaagggaa
tctcccatcgttcagggcatcggtgacatcatgctggccaggtttgagggcgtggcgggg
gaggagtttcaggagcaggcgtcccacctgtgcagccagcagtctcaggctctggaactc
attaagaacaagcagcgcaaagacccccgcttcacacacatcatccaggagtgtgaggcc
agtcctcactgtaggaggctgcagctgaaggacctgctggtgtctgagacacagagactc
accaagtaccctctgttactggacaacatcatcaaacacacagaggctggctgcacagac
ctcccgcctctccaacgtgcacaggcctgctgccgcgggattctgcaggccgtcaatgaa
gtcgtcagggagactgaacaccggcaacgactcaaccaataccagcgcaggctggacccc
acgccacagttcaagagtctggacctgaccagtaagacaatgatccatgagggtcctctc
acctggaaagtcaataaagacaaaactttagagatccaggccctgctgctatcagacctg
ctggttctgctccagagaggtccagacgaccggctgctactgcgctgtccttcccgctgg
ctggggggaggaggtggtagcggggacaccaaggcctccttcagccccgtggtccagcta
gactccctcctggtgcgctctgtggccacagacaacaaggccctgtacgtcatcagcacc
acagagagaaagatctatgaactggtagcggggacgtcctcagagaaaaacatctggaag
gaccaacttgaaaagaccatctcattggttgctggctcctcaccttcgaccaataacaga
tccacacctattttctccccaagtcttggcaacgcttcccctgtctcaactggcagccat
gtctatcaatcagacgactcgatgacggagcaggtggttttcatggagacggactcccct
aacgatgaggataacgagctcgcacgcaccacaccaacggaccaatcaggagctttcttc
tgcggggaggggcaggactacgtcaagcgacgaattggagtagcagaggcagctcttgaa
gacgtggagacgctaaggcagctgattttccgcgacctggaagatgggtggagtcacggc
tcagatggcacgcacacaaacgaggcagccaatgagaggaccccgttcaatgaccatcag
aggccgccgtcctctgagactctccttagcgtcagtcccagccaatggggggctgagcac
gcagaagccccgccctcggaggtggagtgccccagtgtgcatgttgtgaggaaagctgtg
gttgcgggctcccctatccctgatgacatcactgaagatgtcaccctccactctgaccaa
tcacctgagccgagaggcgaggccagtgtacggggaaacgtgttctacctggtgatgcct
acagagcagggagagggactgctggacgagagtcacacagatgaggtcaacgacccgacc
accactgaacttcctgatctggaacaggaagtgatttcatcgcccgtacagactcatgag
aaagaagggcaggtcgcttccatcatgtctgcggacaatcaatcggagaggggaaatctg
agtcggcaggaagggcagagtcaatcacaaaagagcctccagagccatataatcaaaaac
gtggatgacattttccacaccatcgaggagttgatgagaaagctgcaccagctgagggac
atagagacagctcatcaccagctcctgaaaacactgagagagccacctgtcaatccagag
tctggtgacctctttcatatccaggcaaccgtcgtcaggacaccgtttctggaccgggac
ccaggggacggaaaggaggcgagcccagcagagccagccaagctgaagatcctctccact
ggattctaa
DBGET
integrated database retrieval system
