Oncorhynchus kisutch (coho salmon): 109906432
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Entry
109906432 CDS
T09179
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
oki03015
mRNA surveillance pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109906432
09122 Translation
03013 Nucleocytoplasmic transport
109906432
03015 mRNA surveillance pathway
109906432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109906432
03041 Spliceosome [BR:
oki03041
]
109906432
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109906432
Spliceosome [BR:
oki03041
]
Complex C
Other components
EJC/TREX
109906432
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
109906432
NCBI-ProteinID:
XP_020359719
Ensembl:
ENSOKIG00005032120
LinkDB
All DBs
Position
LG16:18471462..18500368
Genome browser
AA seq
1436 aa
AA seq
DB search
MADEDVTLDGKSLQSLRVADLKAALEHRHLPKSGAKNALIKRLKGALMLENVKKTSTSHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEVDGETGPEEEEDEDEEEE
DTEQDNDSASYHPDKHCPIPSQPPLTRAEEGGGGGTMMMGQGMMSQGMGKGTMSRRPHFG
PGSVPQESPDAPGSWTQQRLSLHTGLRHEELTTPSPPRAVASLSVRVLGDPERQGLPPSM
PPRVQAQENEGTAPADDDRPAHYVLHLSRSARAAASAGGNRVQEDSDDDDSSEEDEDEWG
PAAGARRGGGGRGRSPPPRPQQPSPSIPVGRERSRRKLQPPQHIPPQQVVHQPPMQLRQP
TPPPSPPPELSFPLPDTPKQSPPDMDEEPEGAGAGVAVRSPPGGLQRHDSDSSSRSSSPE
PLAQRRPGPLSLLARKMASEGAFGKRGEGASDGQTGPGGESSGSGDGGSIVPGAGPGVGV
VLFPGAAITHIGGSSAAHSGTVPVPEVPAPVSMFGSGAQFHPLSLVSGAAVPGITLTVEP
QGTSGETAQKRTEKEEKQVERESCLPPWKHGRDVTSVSSPFGSGGSEVPAVHQGDSPKKS
PFGSDEPLSSPPGSIACLPALAPKKPRMFSDTSSGSMASPPKPGQQGSVVVTTPGEPPLK
QEVLVSGAQQDTDNTIEITSPNKASAEKPGWKTGGEIVKMEKESDSQAEKATPKAAGETR
RRGPEEAVEVEPMGPALPPSYPGKGEEEKKRKEDVRKKEEERCRQRKRTSDRSSSPSSGG
DSSSSDSDSGSSSSHSSGSTSSRDKKKKSVPGKGRGDERRRLEKGGEKKQPSREKKQSSL
SEPSGPGPMEVERPDPEDSRAPQPTPEGDPENSEGRMEESTTPKALATRNISLTTGSKTS
PEGAGEAESGTAAGRKRRWGSCMAVTTKKPSISITTDSLKSLIPDIKTSQEAVMDLHPDD
SQLSGDEDTSTTREDQGLDKDLKIRRTVTQVVPGESHENGRGEREEEEENKRERERTHKE
KRKNSYSEDGMVCQSSTTHDANAKKVTPSDTLVRRSISQQKSGVSVTIDDPVRTDKLPSP
PRGKVSSIVHVCNLVRPFTLGQLKELLNRTGSVVEEGFWIDKIKSHCYVTYSSTEEAVAT
RAALHRVKWPQSNPKVLSVDFCEQNELDFHRGLLTVDPREEHRPQPAVGPGGPKVRPGGL
PPLMPERDGRADRGAVGGVRDQWAEREREMERRERTRAEREWDRDKVRDFGGKPGEERER
GRRSRSLDRERRRKEREGKEKKIDKKAVPTDEPPVKLLDDLFNKTKAAPCIYWLPLTEEQ
ANQRGKEREERQKERERRRKEQQEEEDKKREEEKKERMKSREEGGAAVSTGGGSVRGSEG
DRDREGERGRDREGERGRDGDKRKDIGGLKPKGPDVKPLSGFRHSRSRSNLRDRRR
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctggatggtaaatcgctacaatcgctccgtgtggcggat
ttgaaagccgctttggagcatcgacacctccctaaaagcggggcaaaaaatgcgctcatt
aagcgactgaagggggctctgatgttggaaaatgttaagaagacttccacttcccacatt
gggcttcagcccaactcccagattggggaggagatgagccagaacagcttcataaagcag
tacctggctcagcagcaggagctccttcgccagaggctggagagagaggcccgggaggcg
gcagaggtcgatggggaaacaggcccagaggaggaggaggacgaggatgaggaggaggag
gacacagagcaggacaacgacagtgcttcctaccatcctgacaagcattgccccataccc
tctcagcccccactgacccgggctgaggaaggaggtggaggagggacaatgatgatgggg
caaggaatgatgtcccagggtatgggcaaagggacgatgtctcgcagaccacactttggc
ccaggctccgtgccccaggagtcccctgacgcccctggctcctggacgcagcagcgtctc
tcactccacactggcctccgccacgaggagctcaccaccccctcaccaccccgcgctgtg
gcctccctgtctgtgcgtgtcctgggggaccccgagcgccagggcctgccaccctccatg
cccccccgcgtccaggcccaggagaatgaaggcaccgccccggcggatgacgaccgaccc
gcccactatgtgctccacctcagccgctccgctcgggcagcagccagcgccgggggtaac
cgcgtccaggaagacagcgatgatgatgacagcagtgaggaggatgaagatgagtgggga
cctgcggcgggggcaagaagaggtggcggtggaagaggacgttcccctccccctcggccc
cagcagccttcccccagcatcccagtgggccgagagaggtccagacgcaagctccagcct
ccgcaacacatcccccctcagcaggtagtacaccagccccccatgcagctccgccagccc
accccgcccccctcccctcctccagagctctcctttcctctacccgacacccccaagcag
agcccgcccgacatggatgaggagccagaaggagcaggggctggggtagccgtccgctcc
cctccaggtggcctccagaggcacgactctgactccagctcccgctccagcagcccagag
cccctggcccagcggcggcccggacccctctccctgctcgcccgcaagatggcttccgag
ggagcattcgggaagagaggtgagggtgcctcagacggccagacaggtcctggtggggag
tcatccggatcaggagatggcggtagcatcgtcccaggagcaggaccgggggttggggta
gtcctgttccctggggctgctatcacccatatcggaggcagcagcgcagcgcactccgga
accgtccctgtacccgaggtccctgcaccagtgtctatgtttggatcaggggcccagttc
catcctctctctctggtgtctggagcagctgtcccaggcatcaccctcaccgtggagccc
cagggtacatctggagagacggcacagaagagaacggagaaagaggagaaacaggtagag
cgtgagagttgcctgccgccatggaagcacggacgtgatgtgacgtctgtgtcctcgccg
tttgggtctggggggtcagaggtgcctgcggtgcaccagggggacagcccgaagaagtca
cccttcggcagtgacgaacccctctcctcccctcccggctcaatcgcctgcctgcctgct
ctcgcccccaagaagccccgcatgttctccgacacctcatccggctccatggcatcccct
cccaaacctgggcaacaggggtctgtggtggtgaccacgccaggggaaccccccctcaaa
caggaagtcctcgtctcaggggcccagcaggacacagacaacaccatagagatcacctca
ccgaacaaggcgtccgcggaaaagcctggatggaaaactggaggagaaattgtaaagatg
gagaaggagagtgacagccaggcagaaaaggcgacaccgaaagccgccggcgagaccagg
agaagaggacctgaagaggctgttgaggttgagcccatggggcctgctctgcccccctct
taccctggtaagggagaagaagagaagaagcggaaggaagatgtgaggaagaaggaagaa
gagcggtgcaggcagaggaagaggacgagcgacaggagttcgtcgccctccagtggtggc
gactcttcatcctccgactcggattctggatcctcttcatcacattcctctggctccacc
tcctcccgggacaaaaaaaagaaatctgtcccgggaaaaggaagaggggatgaaaggaga
agactggaaaaaggaggagagaagaaacagccttccagggagaagaagcagtcttccctg
tcggagccgtccggccctggccctatggaggtggaaagaccagacccagaggactccagg
gccccccagcccacccccgaaggggacccagagaacagtgagggccgcatggaggagagc
accactcctaaagctttggccacacgcaacatctctttaaccacaggcagtaagacgtct
ccagagggagcaggagaggcagagtctgggaccgccgcggggaggaagaggaggtgggga
tcctgcatggccgtcaccaccaagaaaccctccatcagcatcaccacagactctctgaag
tctctgatcccagacatcaagaccagtcaggaggctgtgatggatctccacccagacgac
agccagctgtctggggacgaggacacctccaccaccagggaggaccagggcctggacaaa
gaccttaagatcagacgcaccgtcacacaggtggtcccaggtgaaagccatgagaatggc
cggggagaacgagaggaggaagaggagaataaacgggagcgtgagaggacacacaaagaa
aagcgaaagaacagctactcagaagatggcatggtgtgtcagtcctccacaacacacgac
gccaacgccaagaaagtcactcccagtgatactctggtgcgtcgctccatcagtcagcag
aagtctggtgtgtctgttaccatcgacgatccagtccgcacagacaaactgccctctccg
cccagaggcaaagtctccagcatcgtccacgtctgtaacctggtgcgacctttcaccctg
ggtcagctgaaggagctgctgaacaggacaggctctgtggtggaggagggcttttggatc
gacaagatcaaatctcactgctacgtcacttactccagcacagaggaggctgtggccaca
cgagctgctctgcacagggtgaagtggccccagagcaaccctaaggtcctcagtgtggac
ttctgtgagcagaacgagctggacttccacagaggtctgctgaccgtggaccccagagag
gagcaccggccccagcctgccgtgggtcctggaggtcccaaagtccgaccgggggggctg
ccccctctgatgcctgaacgggacgggcgcgcggaccgcggggctgtcggaggggtgcgg
gaccagtgggcggagagagagagggagatggaacgccgggagaggaccagggcggaacgc
gagtgggaccgggacaaggtgcgagacttcggaggaaaaccaggagaggagagggagaga
gggaggagatctcgctccctggatagagagaggaggcgaaaggagagggaagggaaggag
aagaagatcgacaaaaaggctgttccaacagatgaacctcctgtcaaactactagacgac
ctcttcaataagaccaaagcagctccctgtatatactggcttcccctcactgaggaacag
gcaaaccagagggggaaggaacgggaagagcgacagaaagaacgagagaggaggcggaaa
gaacagcaggaggaggaggacaagaagcgagaggaggagaagaaggagagaatgaaaagt
agagaggagggaggcgctgcggtcagcactggaggtgggagtgtccggggatctgaggga
gacagggacagagagggggagcgagggagggacagagagggggagcgagggagggacggg
gacaagaggaaggacattggtggtttgaaacccaaaggtcccgatgttaaacccttgtcg
gggttccgacactcccgtagccgtagcaacctccgagacagacgccgctga
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integrated database retrieval system
