Oncorhynchus kisutch (coho salmon): 109906504
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Entry
109906504 CDS
T09179
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki02010
ABC transporters
oki04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109906504
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109906504
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oki02000
]
109906504
Transporters [BR:
oki02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109906504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
109906504
NCBI-ProteinID:
XP_020359812
Ensembl:
ENSOKIG00005005518
UniProt:
A0A8C7D5D4
LinkDB
All DBs
Position
LG16:complement(22128008..22354628)
Genome browser
AA seq
2254 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFFILVWVRSTTQPIYQGECHYPNKA
MPSAGVLPWLQGMMCNIDNPCVNHSTPGEAPGQVNNFNNSIIAGMLIELQSLLANRSIIT
KIQTLSDDVDQWVLILPTSNREKGQPIPLRSILNDNEMFTTYLRENLAMPSTVADGLITS
NIHLNEMMGISRQDDLRITLCSGTALDRYVEFTSAFDKEAFQKVSCSLTAQQLRQTREVF
LQNLDPRKMLTNLPSALDLAPSETFGLVRKTTEDALTVIDEMNKLQNSMLFKAADRLDFR
ADAFGSLNILLCGKVSNSNSTKTTMNFPAFGAMRNDTENKARSNNSSAFCNVLIDTLEGT
PGLRIVWRTFRPLIQGKILYTPDTPATRLMVKEANSTFNALAMLKELLEAWEDFEPRGWN
YFQNGPQASALRAFLDNPVFAAALNHGLEGTRWTEELLANFLYNGPPEDRPAGMPPNDWR
DLFNATSQILDLLKKFIGCLDLDKFEAVDSEGHLVARALELLENDTYWAGIVFEDLDPAA
SHPPPYVKYKIRLDIDEGESTNKIKERGWSPGARDSFNNLRYIWGGFAYLQDMMDHGIIR
VHTNKSQPLGVFAQQMPYPCYVDDVFLASIGTMLPMYLVLAFMYTVCMTIKGLVLEKELR
LKEVQRAVGVQNGAIWFAWFTENFVLLMVPCAFISVMVKYGKVLQYSDPSVIFVFLLVFC
VATIMECFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVMGFQVKIAVSLLSCVA
FGYGCENFAKYEEQGIGIQWSNIAQNPEDGDRYSFIVSIIMMLVDSLIYWLLTWYIENVF
PGQYGIAKPWYFPFTASYWCGTSPAPNADPSQFKDPIEYTGYLEKPPLNMKAGVSIRNLV
KIYKTGKKLAVDGLTVDFFENHITSFLGHNGAGKTTTMSILTGLFAPTSGTALINGYDIR
TDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYSRLKGRSRDEVKTEIDQMIEDVGLPHKR
KEFAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWELLLKYKQGRTIIL
STHHMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGSGYYLTLVKAGDGQMTNQCTGVE
QRQVKEETGESLRRTSLVEGIARQNWSNSEPTDVSKVVCRHVPEAVFLESIGQEITYILP
YGGAKDGTFALLFKELDLKMADIGVTNYGISDTTLEEIFLKVAEDTGVDAEIPAINAALV
RDKTRSSRESKRQRQSLTKVGDTSDEMPGESAEDEMKVKFTSRVEDVERVANVNGKGSSV
ITGWELIRRQFLALFIKRFHHARRSRKGLIAQVILPAVFVCLSLIFSVIVPPFAEYPNLE
LQPWMYGLPQTTFYSNDGPPNNTEVARVADSLVNNPGFGTRCMANNPIPNLPCVPNDSKW
FTPTVDPSISNIFVNGNWSMANPSPNCQCSTPQKTTMLPDCPPGAGGLPPPQRTQNTTDT
LQDMTGRNMTDFLLKTYKEAGRKRYGGISVGGVNSQVRMTEPEIEAVIRDLRSLLNSSQD
NTTDQMLLNTEMLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPPGHDPREY
GISSSSHPLNLTKAQLSYQAMAATSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHL
QFVSGVNPTVYWVANFAWDICNYIVPCLIVIVIFLCFQQKAYVSLPNLPALILLLMMYGW
SITPMMYPASFIFNVPSTAYVVLTCINLFIGINGSVATFVMELFADDNISKINGIVKQVL
LIFPHFCLGRGLIDMGKNQAMATLYDSFGEDRYQDPLSWDMVGKNLCAMAIQGAVMFTIT
LLIQYKFCCKPRLISGESFSKEDEDVDVARERARIHKGGSEKDLLRICDLSKVYSGKKIP
AVDRVCVGVPAAECFGLLGINGAGKTTTFKMLTGDISISGGEAFLNGYSIRTEMRDVHQN
MGYCPQFDALNDLLTGREHLEFYARLRGVPEKEVPMVAEWGIQKLGLVKYSNKSAGTYSG
GNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEEC
EALCTRMAIMVNGQFKCLGSIQHLKSRFGEGYTVIVRVGGSPPALGPVEEFVHDSFPGSI
LKEKHHNTLQYQLPHSGGALASIFSHFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQQEE
DNQALQAYDNKVDVSDEMPMETRISTDSTVPESV
NT seq
6765 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaactcggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtctggtggtggagctgttgtggcctctctttctgttcttcatcctggtc
tgggtgagatcaaccacccaacccatttaccagggcgaatgtcattatccaaataaagcc
atgccttccgccggggtgctgccttggcttcaaggcatgatgtgtaacatagacaaccca
tgtgtcaaccattccacgccgggagaagcaccgggacaagtcaacaacttcaacaattcc
ataattgctgggatgttgatcgagttacagtcacttctggcgaacagatccatcataacc
aagatccagacgctttccgatgatgtggaccagtgggttttgattctaccgacatctaac
cgtgaaaaaggtcagcccattcctctgagaagtatcctgaatgacaatgaaatgttcacc
acatatctgagggaaaacttggccatgccatcgacggtagccgacggtctgattacctca
aatattcacctgaatgagatgatgggcatttcaaggcaagacgatctgaggatcaccctt
tgcagtggaacagctcttgatagatacgtggaattcaccagcgcctttgacaaggaggcc
tttcagaaagtcagctgctccctcacagcacagcagttgagacaaaccagagaagttttc
ctacaaaacctggatccaaggaaaatgctcaccaatctaccttcagctttggatttggct
ccgtccgagacctttggattagtgagaaaaactacagaggatgccttaaccgtgattgat
gagatgaacaagttgcagaactcaatgttgttcaaggccgctgataggctggatttcaga
gcagatgcatttggcagtctgaacatcctactttgtggtaaagtatcaaactccaactcc
acaaagaccaccatgaatttccctgcttttggagcgatgaggaatgacacagaaaacaag
gccaggagcaacaattccagtgccttctgcaatgtactgattgacactcttgagggaact
cctggcctacgtattgtttggaggacatttcggcccctaatccaagggaagatcctctac
acccctgacacacctgcaactagactaatggtgaaagaggcaaatagtactttcaacgca
ttggccatgttgaaagagttgttggaagcttgggaggattttgaaccacgtggttggaac
tactttcaaaatggcccccaagccagtgcactgcgggcctttctggataacccagtgttt
gcagccgcactcaaccacgggctcgaaggcacaagatggacggaagaactgctcgccaac
ttcctgtacaacgggccccctgaggaccgccccgcgggcatgccgccgaatgactggcgc
gacttgttcaacgccaccagccaaatcctggacctcctgaagaagttcattgggtgcctg
gacctggataagtttgaggctgttgacagtgagggacatctcgtggctagagccttggag
cttctagaaaacgatacgtactgggctggtatagttttcgaagacctcgaccctgccgcc
agccacccccctccttacgtcaagtacaagatccgcttggacatcgatgagggggagagt
accaataagattaaagaaaggggatggtctcccggggcccgtgactccttcaacaacctg
cgctatatatgggggggcttcgcctatctgcaggacatgatggaccacggcattatacgg
gtgcacacgaacaaatcacagccgctcggtgtgtttgcccagcaaatgccgtatccctgc
tacgtggacgacgtcttcctcgcgagtatcggaaccatgcttcccatgtacctggtgctg
gccttcatgtacaccgtctgcatgaccatcaagggcctcgtcctggagaaggagctcagg
ctcaaggaggttcagcgggccgttggagttcagaacggtgccatttggtttgcgtggttc
accgagaactttgtcctgctcatggtcccatgcgcattcataagtgtcatggttaagtat
gggaaggtgctgcagtacagcgacccctcagtgatcttcgtcttcctgctggtcttctgc
gtggccaccattatggagtgtttcttcatcagcgtcttcttctccaaggccaacctggcg
gcggcgtgcggaggcctcatctacttcgtcctctacctgccgcacctcctctgctatgcc
tggagggacgtcatggggttccaggtcaaaatcgctgtgagtttgctgtcgtgcgtggcc
ttcgggtatggctgtgagaactttgccaagtatgaggagcagggcatcggtattcagtgg
agtaacatcgcccaaaatcctgaagacggagaccggtatagcttcatcgtgtccatcatc
atgatgctagtcgactccctcatctactggctgctcacgtggtacatcgagaacgtcttc
ccaggccaatatggaatagcaaagccatggtacttccctttcaccgcctcctattggtgt
gggacttcaccggcgcccaatgctgaccccagtcagttcaaggaccccattgaatacacc
ggttatttggaaaagccaccactcaatatgaaggcaggggtctcaatcaggaaccttgta
aagatctataaaactgggaaaaagcttgcagtggatggactaactgtggacttcttcgag
aatcacatcacctctttccttggtcacaatggggcaggaaaaacaaccaccatgtcgatc
ctgacaggactcttcgctccgacgtcggggaccgctctaataaacggttatgatatccgc
acagacatggacaccattagaaagcatctgggaatgtgccctcagcacaatgtcttattc
aatgacctcacagtggaggaacacatctacttctactccagattaaagggacgaagccga
gatgaagtgaaaacggagattgaccaaatgatcgaggatgtcgggctgccacacaaacgc
aaggaatttgccaagaacctgtcagggggaatgcagaggaaattgtcggtggcaatcgca
ttcgtgggagggtccaacatcgtcatcctggatgaacccacagcgggggtggacccatac
gcccggagggggatatgggaactactgttgaagtacaaacaaggtcgcacaatcatcctc
tccactcatcacatggatgaggcggacatcttgggagaccgcattgccattatctctcac
ggcaagatgtgttgctatggctcctccctgttcttgaagaaatactttggcagtggctac
tacctcactctggtcaaggccggagacgggcaaatgaccaaccagtgcactggagtcgag
cagcgccaggtgaaagaggagactggtgagtcattgaggagaaccagtctggttgaaggg
atcgcacgacagaactggagtaactctgaacccacagatgtcagtaaggtagtgtgtcgg
catgttcccgaggcggtgttcctcgagagcatcggccaggagatcacctacatccttccc
tatggcggggccaaggatggcacctttgccctcctcttcaaagagctggaccttaagatg
gctgacattggtgtcaccaactacggcatctcagataccacactagaggagattttcctc
aaagtggcagaggacacaggtgttgatgcggaaataccagctatcaacgcagctttggta
agagacaagacaagaagttcaagggaatccaagaggcaacggcaaagcctcaccaaagtc
ggggacacttcagacgaaatgcctggggaaagtgctgaagacgagatgaaagtgaagttc
actagcagagtggaggatgtggagagagtggccaatgtgaatgggaagggctccagtgtg
atcacgggatgggaactgatccggagacagttcctggccctcttcattaaacgctttcac
catgcacgcaggagccgcaaaggcctcattgctcaggtgattctgcctgctgtcttcgtc
tgcctgtctctcatcttctccgtcatcgtcccgccttttgcggagtaccccaacctggag
ttgcagccttggatgtatggactgccccaaacgacattctacagcaatgatggaccgcca
aataacaccgaggttgctcgggtggcggactctttggtgaataatcctgggtttgggact
cgctgcatggccaacaacccgataccaaatctcccatgtgtcccgaatgattctaagtgg
ttcactcccacagtggatccctctatcagcaacatcttcgtcaacggaaactggagcatg
gccaacccttcccctaactgccagtgcagcactcctcaaaagaccaccatgttgccagat
tgcccacctggagccggtgggctgcctccccctcagaggacccagaataccacagacaca
ctgcaggacatgacggggcggaacatgacagacttccttttaaagacctacaaggaagca
ggcagaaaaaggtatggagggatttctgtcggaggggtcaactcccaagtcaggatgact
gaaccggaaatagaagctgtgatcagggatttgaggagcctattaaattcctcccaggat
aacacaaccgatcagatgctcctgaataccgagatgctcctgaaagagctcgggaccagg
gataatgtcaaggtgtggttctacaaccaggcgtggcacggtattgtatcgttcctcaat
gtggccaacaacgccatcctgagaggcaacctgccgccgggtcatgaccccagggagtat
ggaatctcctcctccagccaccccctcaacctcaccaaggctcagctttcctaccaggca
atggccgccacctccaccgatgtggtggtgtccatctgtgtcatctttgccatgtccttc
atcccagcaagcttcgtcctcttcctcatccaggagcgtgtcagcaaggccaagcacttg
cagtttgtcagtggcgtcaacccgaccgtctactgggtcgccaacttcgcctgggatatt
tgcaactacatagtcccgtgtctaatagtcatcgtcatcttcctgtgtttccaacaaaaa
gcctacgtgtcccttcctaacttaccagctttgattctgctactgatgatgtatgggtgg
tctatcacacccatgatgtacccagcctcgtttatcttcaacgttcccagcacggcctac
gtggtgctgacctgcatcaacctcttcatcggcatcaatgggagcgtggccaccttcgtc
atggagttgttcgctgatgataacatctcgaaaatcaatggtattgtgaagcaggtgctg
ctgatttttccgcacttctgtctgggtcgggggctcatcgacatgggcaagaaccaggct
atggccaccttgtacgatagctttggggaagaccgttaccaggaccccctcagctgggac
atggtggggaagaacctctgtgccatggccatccagggggcagtcatgttcaccatcact
ctccttatccagtataagttctgctgcaaacccagactgatttctggagagtcattctcc
aaggaggacgaagatgtggacgtggcacgggaacgtgcacgcatccataaaggtggctca
gagaaagacctgttgagaatctgcgatctttctaaggtgtactctgggaagaagattcct
gctgtggacagggtgtgtgtgggcgttccagccgcagagtgctttggacttctggggatt
aacggggcaggaaaaactaccaccttcaagatgctgacgggggacatctccatctccgga
ggggaggccttcctaaacggatacagcatacggacagagatgagggacgttcaccagaac
atgggctactgcccgcagtttgacgccctcaacgaccttctcaccggacgagagcacctg
gagttctacgccagactacgaggcgtaccggagaaagaagtccccatggtggcagagtgg
ggcatccagaagctaggcctggtcaaatactccaacaagtcagccggtacctacagtgga
gggaacaaacgcaagctctccaccgccatggctttgattggctgtcctcctgtggtcttc
ctggatgagccaacaacagggatggaccccaaagccagacgcttcctgtgggactgcatc
ctgagtgtcatcaaagagggacgctcagtcatcctaacatcacacagcatggaggagtgt
gaggccctatgcacgcgcatggccatcatggtgaatggacagttcaagtgtctgggcagc
atccagcatcttaagagcaggttcggagaaggctacactgtgatcgtgagggtgggcggc
tcgccccccgccctgggccccgtggaggagtttgtccacgattccttccccggtagcata
ttgaaggagaagcaccacaacacgctgcagtaccagctcccccacagcgggggcgctctg
gccagcatcttcagccatttcaccactcatcagcagaggctgggtgtggaggactactct
gtctcccagaccactctggatcaggtctttgtcaactttgcgaggtaccaacaggaggag
gacaatcaggccctgcaagcttatgacaacaaagtggacgtgtctgacgaaatgccaatg
gaaactcggatctcaaccgactcaactgtaccagagagcgtctga
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integrated database retrieval system
