Oncorhynchus kisutch (coho salmon): 109906520
Help
Entry
109906520 CDS
T09179
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109906520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109906520
03009 Ribosome biogenesis [BR:
oki03009
]
109906520
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109906520
Spliceosome [BR:
oki03041
]
Complex A
U2 snRNP components
U2 related factors
109906520
Complex B
109906520
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109906520
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
90S particles
Helicases
109906520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
AAA_25
nSTAND3
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
109906520
NCBI-ProteinID:
XP_031647934
Ensembl:
ENSOKIG00005023620
LinkDB
All DBs
Position
LG16:complement(25174931..25208496)
Genome browser
AA seq
739 aa
AA seq
DB search
MHVGSLLRVAIRRDRDRDRDERSKDRDRDRDAKLSGMALNPAVGSAGLSHKQTAMQQQIN
PFTNLPHTPRYYEILKKRLQLPVWEYKERFNYILGRHQSFVLVGETGSGKTTQIPQWCVD
MVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVKLGQEVGYSIRFEDCSSAKTFLKYM
TDGMLLREAMNDPLLERYGVVILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLD
AGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDCLLFL
TGQEEIDEACKRIKRDIDDLGHDAGDIKIIPLYSTLPPQQQQRIFEPPPPRKPNGAIGRK
VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRT
RPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETL
MRALELLNYVAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITAMLSV
PQCFVRPTEARKAADESKMRFAHIDGDHLTLLNVYHAFKQNHESTQWCYDNFVNYRSLMS
ADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRALVTGFFMQVAHLERTGHYLTVKDN
QVVQLHPSTVLDHKPEWVMYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYEMGNFPNCEA
KRQLERIVAKLSTKEYSQY
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtgggtagcctcctgcgcgtggccataaggcgagaccgcgacagggaccgcgac
gagcggtcgaaggacagggacagagaccgggatgccaagctctctggcatggccctgaac
ccggctgttggcagcgcaggcctctcccacaagcagacggccatgcagcagcagatcaac
ccgttcaccaacctgccccacacgccgcgttactacgagatcctgaagaagaggctgcag
ctgccagtgtgggagtacaaggagcgcttcaactacatcctgggacgccaccagagtttt
gtgctcgtcggtgagacgggctcaggcaagaccacgcagatcccccagtggtgtgtggac
atggttaaggggttgggcggacctaagaaggcagtggcctgtacccagcccaggagggtg
gcagccatgagcgtggcccagagggtggccgatgagatggacgtcaagctgggccaggag
gtcggttactccattcgattcgaggactgcagctcggccaagaccttcctcaagtacatg
acagacggtatgttgctgcgggaggccatgaacgaccctctgctggagcgctacggcgtc
gtcatcctggacgaggcccacgagagaacgcttgccacagacatcctcatgggcgtcctc
aaagaggtggtccgccagaggtcagacctcaaggtcatcgtcatgagcgccacgctggat
gccggcaagttccaggtgtactttgacagctgtccgctgctaaccatcccgggacgcacg
cacccggtagagatcttctacacgccggaacccgagagggactacctggaggcagccatc
cgcaccgttatccagatccacatgtgtgaagaggaggagggcgactgtctgctcttcctc
actggacaagaggaaatcgacgaggcctgcaagcgcatcaagagggacatcgacgacctg
ggacacgacgcgggggacatcaaaatcatcccgttgtactcgacgctgccgccccagcag
cagcaaaggatctttgagccgccaccaccccgcaagcccaacggagccatcgggaggaag
gtcgtggtttcgacaaacatcgctgagacatccctgaccattgacggtgtggtgtttgta
attgatcccggatttgccaagcaaaaggtgtataaccctcgtatcagagtggagtccctc
ctggtgacggccatcagcaaagcctcggcccagcagagggcggggcgcgccgggaggaca
cgcccagggaagtgcttccgcctctacacagagaaggcctacaagaccgagatgcaggac
aacacgtatccagagattttgaggtccaacctgggttcggtcgtgctgcagctcaagaag
ctaggtatcgacgacttggttcatttcgacttcatggacccaccagcaccggaaaccctg
atgcgggccctggagctgctcaactacgtggcggcactcaacgatgacggcgacttgacg
gagctaggctccatgatggccgagttccccctagacccgcagctagccaagatggtgatt
gcctcctgcgagttcaactgctccaatgagatcctgtccatcacagccatgctgtcagtc
ccacagtgcttcgtacgacccacggaggctaggaaggcggccgacgagtccaagatgcgt
ttcgcccacattgacggagaccacctgaccctcctcaatgtctaccacgccttcaaacag
aaccatgagtcgacacagtggtgctacgacaactttgtgaactacaggtcgctgatgtcg
gccgacaacgtgcgccagcagctgtcccggatcatggaccgcttcagcctgccccgccgc
agcacagagttcaccagcagagactactacatcaacattcgcagagcgctggtcacagga
ttcttcatgcaggtagcccatttggagcgtacaggccactacctgactgtgaaggacaac
caggtggtccagctgcacccctccactgtgctggaccacaagccggagtgggtgatgtac
aatgagtttgtgctgaccaccaaaaactacatccgcacctgcaccgacatcaaaccagag
tggctggtgaaaatcgccccgcagtactatgagatgggaaacttccccaactgtgaagcc
aagagacagttggagcgcatcgtagctaaactctcaaccaaggaatactctcagtactaa
DBGET
integrated database retrieval system
