Oncorhynchus kisutch (coho salmon): 109906521
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Entry
109906521 CDS
T09179
Symbol
frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109906521 (frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
oki04091
]
109906521 (frem1)
Lectins [BR:
oki04091
]
C-Type lectins
Lecticans
109906521 (frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
109906521
NCBI-ProteinID:
XP_020359834
Ensembl:
ENSOKIG00005023905
LinkDB
All DBs
Position
LG16:complement(25408563..25440892)
Genome browser
AA seq
2200 aa
AA seq
DB search
MGLQRGALRWALPWLLLVMAGGSHGSLVKTNLGLRVKRGQLAYLQEGDLQFHIPPVKDAC
KVEVVLNEPITQRVGTLTPQVFDCHYLADDVKYVHNGCPILKEDTVKLRLYRFTETETFT
EVFFLRVEIMEPDCNIIKLGPKSLVVPEFYGLSDTLDGNVVSFHYERMTSLECSIRVNTH
ETHLPGHGQLVIGEPDQLEARGDEPESFIPLRQQLDNKARAMCKTEDCLNGLKLAKVIKV
PCDEFLVMGLRYQHIDPPSPDVDYIALRLDLTDTRSGSIYQSERAWIPVHIPGAVPNQPP
KPAFMSMFILEVDQFILTPLSTATLDAEDGETPKQLLVFNITKPPLEGFITHLSDHTRPI
FSFTWVDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSAPIMVHMSVRTADTNAPR
VSWNMGLSLLEGQSRPITWDQLQIVDNDNFKAVRIITVDGLQHGRLTLRGGKGFMFTVAD
ILAGAVRYHHDDSDTTKDFIIFRITDGRHQTRHKFPINILPKDDSPPFLITNTVLELSEG
HTALLRGSILQASDMDSSDDYILFNITRPPQAGELMKIPGPGLTGYPVSRFLQKDLFHSV
VYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVIVVHISPVPDQPPKEVPGVTRCLVVKE
TEVVHLTKKQLHFIDLESPDSELTYTVTTPPFYSRSYGVHDAGRLFLVDSIAKFTKDAEA
PVLRLFTQHAVNYMKVAYMPPILDIGPYPQHIRLVLSVTNQQGTTVAGICFNITVVPVDN
LAPEVHMKPLTVDEGGECWVGPDHLLLEDHDSTEESLRVELKREPQHGAVQLDGFSMKPG
QNFTVRDLKSLKVRYHHDSSETVGDAIELIATDGINAINFVLEVKVTLINDEVPVLMPGL
KPVLDCAEGQEVIITAEYIYATDADSDDNSLTYMIARQPYHGVVRKNAIVVDRFIQADIV
AGSITYEHTGAEIGLAPRHDTITFVISDGQVENAPSCCNDRGDTLKRGRTQAQESLPLYD
LKVTVFPVDSQMPSIATGDVFVVDEGGVAPITVAHLSASDVDTPLEELVISLVSPPQYGY
IENILPSPGFEKSNTGISIASFSYSDIMNGHVNYVQSRHQRIEPTADQFMLCVSDGKHTS
AHVHFYIIINPINDEVPEFLARNITVREGHMKELDPAVINAVDLDIPKNNLLFSVVQAPQ
HGTIMGRTYGNDVPANGRPVNRHRDAEVLVHDFTMQELRNGMSLMYMHDDSENMVDSFTI
QLDDGKHQLQRHVMVNVLPVNDEEPRVIRNNGLEVEAGEARLISSAILFAQDSDTTSQEI
VYMLESVPTQGLLQVKVGSDWVTQSAGMNCTQETVDMNLLRYLHTGPLGHTQDFFVFHLL
DGKNRSPAQHFHISLKDMEKGDIAIFVMPVKTSRGERMVLTTDVLLATDGTDKPEELFYI
VTVPPGNGHMEYIKHPGVAISTFSQMDIAANLVGYVHDNRATASLETLQFVVSNGKATRN
GTLEIYVETTDRVLPSLTCNSGLRVLQDSSMAVTPDALALSDPDTPPSDLLFFLAQPPQY
GTLLRGGVPLAAGGNFTQWDLQELEVTYRHGGGPSQIDRFAFTASDTTNRSFLLEGRVQT
EPVIFTIQIEPLDSSAPEVVQLQSLWKAEVLSDGRYGIYLSYRELRAQDGNTKDEDLTFH
IHRPPYFGYLENTFKGSFIQQHFTQRDLSKRTIVYIIDPATEALSDSLEFRVSDPLGNTG
PSHTLELKWSRVELAVSEYQACEDQGTVSLDVLRKGNMAESSYITIKVREVTATAGKDFT
LSPSSLIQFDPGVSKRSWRIEITQDHLEEAEETFEVTLVSPEGTVVGSTSKALVKIKDSG
KGQCGSSRAPMGSSLGGKQVQSGPYPQHGSIHLETLPLAKGDQQMTWTRGDGMPQSVPAA
VPATPNMKLRAMANRKTIPPSSVHRNGTDTVFMYHGIMSVRLEDDKSPSRKGRKANIQVT
SRGRQQHAAAAPPVAPNLNPKPVPKTKSDHLLPRSMPEQPNKEPSPSSSPKPCVPELMGL
LHFNQSSGGLLRCNGVSWKPWAPTDEMVSAQNCRKGWTYHSGNCYFLSTERKSSWSTAIR
ACRESHQANLVSVFSKADMDWLWDFSGRKPFWIGLNDRESRGRWEWVGGEPITYTNWRKS
PARGKRKGTRRCVLVWRRAKWQIRDCKTGRGHLYMCYIKT
NT seq
6603 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacagagaggggcactgcgatgggcacttccctggctgctgttggtcatggct
ggagggtcacacggctccctggtgaagactaacctagggttgagggtgaagaggggccag
ctggcctacctgcaggagggggacctgcagttccacatccccccggtgaaggacgcctgc
aaggtggaggtggtgctcaacgagccaattacgcagagggtgggaacgctgacaccccag
gtgtttgactgccactacctggctgatgacgtaaagtatgtccacaatggctgcccgata
ctaaaagaagatactgtcaagcttcgactctacaggttcacagagacagagacctttaca
gaggtcttcttcctgcgtgtggagatcatggaacctgactgcaacatcatcaaactaggg
cccaagtccctggtggtgccagagttctacggcctgtccgacacgctggatggcaacgtg
gtgtccttccactatgagaggatgaccagtcttgagtgtagcatccgtgtgaacacacac
gagacacacctcccgggtcatggtcagttggtcattggggagccagaccagctggaggcc
agaggggacgagccggagagcttcattcctctccggcagcagctagataacaaggccagg
gccatgtgtaagactgaggactgcctgaacggcctgaagctggcaaaggttatcaaagtg
ccctgtgatgagttcctggtgatgggcctaaggtaccagcacatagacccaccgtctcca
gacgtagactacatcgccctccgactggacctcaccgacaccaggagcgggagcatatat
cagtcggagcgggcctggatacctgtccacatccctggcgctgttcccaaccagccgccc
aagccagccttcatgtccatgtttatcctggaagtggaccaattcatcctcacgcccctc
tccactgccaccctggacgcagaggacggagagacccccaaacagctgctggtgttcaac
atcaccaagccccccctagagggcttcatcacccacctgtcagaccacacacgacccatc
ttctccttcacctgggtggacctcaacgacatgcttatcggctaccagccacccaactca
tcccacacccagcgtaggaactacgaggtggagtttgaggtacatgacttcttctttgag
aagagcgccccgatcatggtccacatgtcagttagaacagcagacaccaatgcacccagg
gtgtcatggaacatgggtcttagtcttcttgaaggtcagtctcgtccaatcacttgggat
cagctccagattgtggacaacgacaacttcaaggctgtacgcatcatcactgtcgacggc
ctccagcatggcagactaacactgagaggtggcaagggtttcatgttcaccgtggccgac
atcctcgcgggcgctgtgcgctaccatcacgacgacagcgacaccaccaaggacttcatc
atcttccgcatcaccgatgggcgccaccagacccggcacaagttccccatcaacatcctg
cccaaggatgacagcccaccattcctcatcaccaacacagtgctggagctctctgagggc
cacacggccctgctgagaggatccatactgcaggcctcagacatggactcaagcgacgac
tacatcctgttcaacatcacccggccaccgcaagctggagagctcatgaagatccctggt
cctggactcactggttatcctgtcagccgtttcctgcagaaggacttgttccactctgtg
gtctactaccgccatctagggaatgaggtgtttgatgactccttcgaagtggtgctctcg
gacttccatgacccacccaacctttcagaacctcaggtcatagtggtgcacatcagccct
gtgcctgaccagccacctaaagaggtccctggggtgactcgctgcctggtggtcaaagag
acagaggtggtccacctgaccaagaagcagcttcacttcatcgacctggagtcccctgac
agtgagctcacatacactgttaccactccgcccttctacagcaggtcttatggggtccat
gatgcagggaggctgttcctggttgacagcattgccaaattcaccaaggatgctgaagcc
ccagtgttaaggttattcacacagcatgcagtcaactacatgaaagtggcctacatgcct
cccatcctggacattgggccttacccgcagcacatccggttggtgctctccgtcaccaac
cagcagggaaccacagtcgctggcatctgcttcaacattaccgtggtgccagtggacaac
ctggccccagaggtgcacatgaaacctctgacagtggacgagggtggggagtgctgggtg
ggtccggaccacctgctgctggaagaccatgactctacagaggagagcctgagagtggag
ctgaagagagagcctcagcatggagctgttcagctggatggcttctccatgaaaccgggc
cagaacttcactgttcgcgacctgaaaagcctaaaagttagatatcatcacgacagctcg
gaaacagtgggcgatgccattgaattaatcgctaccgatgggattaacgcaatcaacttt
gttctggaagttaaggtgacactgatcaatgatgaggttccagttctcatgccaggtctg
aaacctgttctggactgtgcagagggacaggaagtcatcatcaccgctgagtacatttat
gccacagacgcagacagtgacgataacagtctgacctacatgattgcccgtcagccatac
catggcgtggtgcgcaaaaacgccattgtggtcgatcgcttcattcaggcagacattgtc
gcagggagtatcacctacgaacacacaggagcggagattggactagcccctcgacacgac
acaatcacgtttgtgatatccgacggccaggtggagaacgctccgtcatgctgtaatgac
cgaggggacacattgaaaagaggcaggacacaagcccaggagagcctgcctctgtatgac
ctgaaggtcaccgtgttccctgtggacagtcagatgccttctattgcaacgggagatgtg
tttgtggtggatgaggggggtgtggcccctataactgtagcccacctcagtgcctcggat
gtggacactcccctggaggagctggtgatcagcctggtctctcctccccagtatggctac
attgagaatatcctgcccagtcctggatttgagaaaagcaacacaggcatcagcatcgcc
tccttctcttacagtgacatcatgaacggacatgtgaactatgtccagtccagacaccag
aggattgagccaaccgctgaccagttcatgctctgtgtctctgacgggaaacacacctcg
gcccacgtccacttctacatcatcatcaaccccatcaatgacgaggtcccggagtttctc
gccagaaatatcacggtgcgagagggccatatgaaggagctggaccctgctgttataaac
gcggtggatctggacatccctaagaacaacctgctgttcagcgtggtccaggccccccag
catggcaccatcatgggccgaacgtatggcaacgacgtgcccgccaatggaagacccgtc
aacaggcacagggacgcagaggtgctggtccatgacttcaccatgcaggagttgaggaat
ggtatgtctctgatgtacatgcatgatgactctgagaacatggtggacagcttcaccatc
cagctggacgatgggaaacaccagctccagaggcacgtgatggtcaacgtactccctgtc
aatgacgaggagcctcgagtcataaggaacaatggactggaggtggaggcaggcgaggct
aggctgatctccagtgctattctctttgctcaggacagcgacactacctctcaggagata
gtctacatgttggagagcgttcccactcagggactgctacaggttaaggtaggctctgac
tgggtgacccagtctgcggggatgaactgcacccaggagacagtggacatgaacctgctg
cgctacctccataccgggccactgggacacacacaggatttctttgtgttccacctgctg
gacgggaagaaccgctcccccgcgcagcacttccacatctccctcaaggacatggagaaa
ggagacattgctatttttgtgatgccggtgaagaccagccgcggtgagcgcatggttctg
accacagacgtcctgctggcgacggacggtacagacaaacccgaggagctgttctacatc
gttacagtcccccccggcaacggccacatggagtacatcaaacaccctggggtggccatc
agcaccttcagccagatggacatcgctgccaacctggtgggctacgtccacgacaacaga
gccaccgcgtcgttggagacactacagttcgtcgtcagcaatggcaaggccacccgtaac
ggcaccctggagatttacgttgagaccaccgaccgcgtgctgccatcactgacctgtaac
agcggcttgagagtccttcaggactcctccatggcggtgacccctgacgccctcgccttg
tccgaccccgacaccccacccagtgacctgctcttctttctggcccagcctccgcagtac
ggcacactgcttcgtggcggtgtcccgctcgctgccgggggtaacttcacccagtgggac
ctgcaggagctggaggtgacttacaggcacgggggcggcccgtcgcagatcgaccgcttt
gccttcacggcctcagacactaccaacaggagtttcctgctggagggaagggtgcagacg
gaacctgttatctttaccattcagattgagcctttggacagctcggctcctgaggttgtg
cagctgcagtctctgtggaaggctgaagtcctgtctgacggtcgctatgggatctacctc
tcgtaccgggagctgagagcgcaggacggcaacaccaaggacgaagacctcaccttccac
atccacagaccaccatactttggctacctggagaatacgtttaaaggcagctttatccag
cagcatttcactcagagggacctgagcaaaaggactatcgtgtatatcatagacccagcg
acagaagccctgtcggacagcctggagttcagagtgtccgaccccctggggaacactggg
ccctcccacacgctggagctgaagtggtctcgtgtggagctggctgtgtctgagtaccag
gcatgtgaggaccagggcactgtctcactggacgtcctacggaaaggcaacatggccgag
tcctcgtacatcaccatcaaggtgagagaggtcacagcgactgctggaaaggatttcact
ctgagcccgtccagcctaatccagtttgatcctggcgtatccaaaaggagctggcgtatt
gaaattacccaagatcacctggaggaggcagaggagacatttgaagtgacactggtgtcc
cctgagggaaccgtagtaggcagcacctccaaagcgctggttaaaatcaaggactctggg
aaaggacagtgtggatccagtcgggcccctatgggctccagtctgggggggaagcaggtt
cagtcagggccgtacccccaacatggctccattcatttggagacactaccccttgccaag
ggagaccagcagatgacctggacccggggcgatggtatgccccagtctgtgcccgctgct
gtgcccgccacacccaatatgaaactcagagccatggccaacagaaagacgattccacca
tcgtcagtccatcgtaatggaacagacactgtgttcatgtaccacgggatcatgtccgtg
cgcctggaggatgacaagtctccgtctaggaagggaaggaaggctaatattcaggtgacc
agcagagggcggcagcaacatgcagccgcagcaccaccagtggctcccaacctcaaccct
aaacctgtccctaagacaaagagtgaccacttgctcccacgttcaatgcctgagcagccc
aataaggagccttcacctagctctagccctaaaccctgtgtcccagagctgatggggctc
ctacactttaaccagagctcaggcgggctcctccgctgcaacggggtctcctggaagccc
tgggctcccactgatgagatggtcagtgctcagaattgtcgtaagggctggacctatcac
agtggcaactgctacttcctgagcaccgagcgcaagtcgtcgtggagcaccgccatcaga
gcatgcagggagagtcaccaagccaatctggtgagcgttttttccaaggctgacatggac
tggctgtgggacttcagtggaaggaagccattctggataggtctaaacgacagggagagc
cgaggacgctgggagtgggtgggtggagaacccatcacctacaccaactggaggaagagc
ccggccagaggcaagaggaaggggaccaggaggtgtgttctggtgtggaggagggccaag
tggcagatcagagactgtaagacgggcaggggtcatctctacatgtgttacatcaagacg
tga
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