KEGG   Oncorhynchus kisutch (coho salmon): 109907213
Entry
109907213         CDS       T09179                                 
Symbol
sem1
Name
(RefSeq) 26S proteasome complex subunit SEM1
  KO
K10881  26 proteasome complex subunit DSS1
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03050  Proteasome
oki03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    109907213 (sem1)
  09124 Replication and repair
   03440 Homologous recombination
    109907213 (sem1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109907213 (sem1)
   04131 Membrane trafficking [BR:oki04131]
    109907213 (sem1)
   03051 Proteasome [BR:oki03051]
    109907213 (sem1)
   03400 DNA repair and recombination proteins [BR:oki03400]
    109907213 (sem1)
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     109907213 (sem1)
Membrane trafficking [BR:oki04131]
 Exocytosis
  Tethering complex
   Exocyst complex assembly proteins
    109907213 (sem1)
Proteasome [BR:oki03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     109907213 (sem1)
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     109907213 (sem1)
SSDB
Motif
Pfam: DSS1_SEM1
Other DBs
NCBI-GeneID: 109907213
NCBI-ProteinID: XP_020360635
LinkDB
Position
LG17:complement(15361569..15369622)
AA seq 71 aa
MSDKKQTVDLGLLEEDDEFEEFPAEDWTGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
EKHGYKMETSQ
NT seq 216 nt   +upstreamnt  +downstreamnt
atgtctgacaagaaacagactgtagatttgggattattagaggaggacgatgagtttgaa
gaattcccagccgaggattggactgggttggatgaggatgaagatgcccacgtgtgggaa
gacaactgggatgatgacaatgtagaggacgacttctctaatcaactaagagcggagctg
gagaaacatgggtacaagatggagacgtcgcagtag

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