Oncorhynchus kisutch (coho salmon): 109907225
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Entry
109907225 CDS
T09179
Name
(RefSeq) nuclear pore complex protein Nup153 isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
oki03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109907225
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109907225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109907225
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109907225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
109907225
NCBI-ProteinID:
XP_020360652
Ensembl:
ENSOKIG00005037903
LinkDB
All DBs
Position
LG17:15535633..15564070
Genome browser
AA seq
1414 aa
AA seq
DB search
MAATGGGKIRSRRYHIASKPYAKSKQQQSGLISRVTDTVKSIVPSWMQKYFTNGEATEGG
GAMLGEEPNSRAPPNGSEEVDPLPDGRDSAEPATSNTEPSTSRLSLNFQDVLSRPPLNRS
HLHFPSLDSTLALGSPSSLFSQPSTPFAGGPFAGASTSFSLVKEIKDNSSQHEDDNISTT
SGFSSRASEKDVPNFKTTSLPQFCSPEMDRPQQSQSSLKKPAFNLSVFGTSSTVSVSQSS
QSSTSTLNSSLLNSSQLGDSPFYPGKTTYGGAAAVRTARSRTATPYQAPLRRQIKAKPAG
APPCGVTSATARRILQSLERMSSPLADAKRIPSTVSSPLSKFPDGSTLDLSHFQAPKKRL
DSPLPPVQKLVIPAAALVSGSRPMSFRPSLTPRGLTQTPGGTPTRQSPLIPEAVAYPCQS
TSSSSLLTYPLSSTPATSSTGSGGGKMKRERTSTRPLSKRPEDEIAELPALPANASISLL
SFPNPKPVVTTTPVLVEPVTNEVPSTTAPSTPPSTPFTFSSPIVMTTAASPPSFSPSSGF
TFSAPVVKMGLSLSNGKMVTPVVAAVKHAASESMEEFEGPFKPAKMLKQGSVLELLKGPG
FAIPGTQTSPVPKAPQETPALSTAPSLGDLFKAPTGSWDCDVCMVRNKPTATKCVACMTP
HPNSTLAKTDSEHFTTLSGLEGSTTTTAAGFGALFTKSAGSWDCDTCLVQNKPQAVKCVA
CETAKPGTGVKATLTLHAFSEAKTLPAAAPFLGFGDKFKKPEGAWECDMCMVQNKAQDIK
CVSCMSTKPGVTAATQSLTPAPVSITPLLGFGAQFKKPDGAWECDVCCVQNKGADQACVA
CQTPKPGALVEPKAFGSSSFGIQSLSDTCSGGFKFGMGVSSDSASGSGGFKFGGTLSDSS
SGGFKFGASASSDTTSTDTSSSAGFKFGSSTEGFKFGASTASTPAADEGRKAEALSMGAG
FKFGISGGILFGTTAAASTESKPSDGGFSFGLSKPTTTTSTLSLPVSTENNSGASTETTT
TASAPIFGKLAEPPTLATPLGGSIFEELLEKDKDPFTFGKPEKEASMGSGFLFSAASKGA
EASAPPGGFSFFMVDPSADQPKAPTFTFGKLADSETPAAKAPKPSFSFGQSATDAAASKP
VFGFMSTTTTSTSTTPAPRLFGPTSSTTPAPIPDPRTFLFGQSASNEATPAKSFLFGQSQ
DSLPAPAASLNPGSAQPFLFGSGPNTAAPSFAFGAAPLSTALSTAPSAAPAQFVFSPASS
SGFGSGQAPTFGQGTSQPNAPAFGSPAPSPFSATASQPPAFGGKANSVPVFDHQANSTPA
FGSSTPAAPGGGFQFGGVGAFGTSSNSTGVFAFGGVPGGSPASSATPSMAPQPSAPGGGF
NFIGSTKSTTFTAAPAGQNSIARRKIKTAVRRKK
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggctgccacgggtggagggaaaattagaagcagaagatatcatatcgcttctaaacct
tacgccaaaagcaaacagcagcagtcgggcctgattagtcgagtgacagacacagtcaag
agcatcgttccttcctggatgcagaaatacttcacaaacggggaggctacagaaggggga
ggggccatgttgggggaggagccgaacagtcgggcccctcctaatggcagtgaggaggta
gacccccttcctgatggacgggactctgcggagcccgctaccagtaatacagagccttcg
acaagcaggttatccctgaacttccaggatgttctgtcgaggccccccctcaatcgctcc
cacctccatttcccctccctggactccaccctggccctggggagcccaagctcccttttc
tcccagccctccacccccttcgctgggggccccttcgctggggcgtcgacaagcttctcc
ctagtcaaggagatcaaggacaatagctcccagcacgaggatgacaatatctccaccacc
agtggcttctcatcacgcgcatcagaaaaagatgtaccaaactttaagaccacgtcgcta
ccccagttctgttctccggagatggaccggccccagcagtcccagtccagtctcaagaaa
cctgcattcaacctgtctgtctttgggacttcctccactgtgagtgtcagtcagtcaagt
cagtcctccacttccacattgaacagttcactgctgaactccagtcagttgggggattcc
cccttctacccagggaagactacctacgggggagcagctgctgttagaacagcccgctca
cgcacagccacaccttaccaggctccattgcggagacagatcaaggccaagcctgctggg
gctccgccctgtggggtgaccagcgctactgcccgacgcatcttacagtccctggagcgc
atgtccagccccctcgctgatgccaagagaatcccctctacggtgtcctctcccttgtca
aaattccctgatggcagcactctggacctttcacatttccaggcccccaaaaaacggctg
gactctcccctccccccagtccagaagttggttatcccggctgcagcgttggtgtctggg
agccgcccaatgtccttcaggccctctctgacccccaggggcctgacccagacccccgga
ggcacgcccacaagacaatcccctctgattcctgaagcagtggcgtatccttgtcaaagc
acaagcagcagcagcctgctcacctaccctctgtccagcactcctgcaaccagcagcaca
gggtcaggaggagggaagatgaagagggagaggaccagcacaagacccttgtccaaacga
cctgaagatgagattgctgagctaccggccctgccagccaacgcctcaatcagtctgctc
agcttccccaaccccaagcctgttgtcactaccacacctgtcctggtggagcccgtcact
aacgaggtgccatcgactacagcaccctccacccctccctccacacctttcactttctcc
tcccctattgtcatgacaactgctgcaagcccaccatctttttccccgtcttctggattt
accttcagtgcacctgttgtgaaaatgggtctgtcactatccaacgggaagatggtcacc
ccagtagtggcagcagtgaagcatgctgccagtgagagcatggaggagtttgaagggccg
tttaaaccagccaagatgttgaaacagggcagtgtgctggagctcctcaaaggacctggg
tttgccattcctggtactcagacctcccctgtccccaaagccccccaggagaccccagcc
ctgtccactgccccctcccttggggacttgttcaaagcgccaacaggctcctgggactgt
gacgtctgcatggttaggaacaaacccactgccacaaagtgtgtggcctgtatgacccca
catccaaactctactttagcgaagactgacagtgaacacttcacaacgttgtccgggctg
gagggttccaccactactaccgctgctggttttggagccctgttcacaaagtctgcggga
agctgggactgtgacacttgtctggttcagaacaagcctcaagcagtcaaatgtgtcgcc
tgtgagacagccaagcctgggactggtgttaaagccacactgactctgcatgccttctcg
gaggctaagactctgcccgctgctgcccccttcttgggcttcggggacaagtttaagaag
ccggagggagcgtgggagtgtgacatgtgcatggtgcagaacaaggcgcaggacatcaag
tgtgtttcctgtatgagcactaagccaggagtgacggcagcgactcagtctctaactccc
gcccctgtcagcatcactcctctactaggctttggggcccagttcaagaagccagatgga
gcgtgggagtgtgacgtgtgctgtgttcagaacaagggagcagaccaggcgtgtgtggcc
tgtcagacccctaagcctggggctttagtagagcctaaagcattcggttcttcgtcattt
ggtatccagtccttgtctgacacttgctcagggggattcaagtttggcatgggggtgtca
tcggactcggcctctggttctgggggcttcaaatttggcggcaccctctctgactcctct
tcagggggcttcaaattcggtgcatctgcttcatcagacaccacctcaacagacaccagc
agctctgcaggcttcaaatttggcagctccacagagggcttcaaatttggagcatctact
gcttccacccctgcagcggacgaggggaggaaggctgaagccctgagtatgggtgccggg
ttcaaatttggcatcagcggtgggatcttgttcggcactacagcagctgctagcacggag
agcaaaccctcagacggagggttctcctttggactatcaaaaccgacaaccaccacctct
actttaagccttcctgtctctacagagaacaacagtggagcttctacagaaaccaccaca
acagcatcagctcctatttttgggaagctggctgagcctcctaccctggccacaccacta
gggggcagcatatttgaggaattgctagagaaagacaaggaccctttcacctttgggaag
cctgagaaggaggcctctatggggtctgggttcctgttcagtgctgctagtaaaggggcg
gaggcatcggctccccctggaggcttttccttctttatggtagatccatctgcagaccag
cccaaagcacctaccttcacatttgggaagctggcagacagcgagaccccagcagcaaaa
gcccctaagccctcattcagctttgggcaaagcgctacagatgctgcagcctcaaagcca
gtgtttgggtttatgtcaaccaccaccacctctacttccaccacccctgcccccaggctg
tttgggcccaccagcagcactaccccagcccctatcccagaccccaggaccttcctgttt
gggcagagtgcctccaatgaggccaccccagccaagtccttcttgtttgggcagagccag
gacagcctgcctgcccctgcagcttccctgaaccctggctcggctcaaccattcctgttt
gggtctggacctaacactgctgctccctccttcgcttttggagcggcaccgctctccact
gccttatctacagctccatcagcagcccctgctcagtttgtattcagccctgcctcctcc
tctggctttgggtctggacaagctcctacctttggtcagggtacctcccagcccaatgcc
cctgcgtttggttctcccgccccgtcccccttctctgccacggcctcccagccccctgcc
ttcggggggaaggccaactctgtccctgtgttcgaccaccaagccaactccacgcccgct
tttggctcatccacccccgccgcaccaggtggaggtttccagtttggaggagtcggtgcg
ttcggcacgtccagtaacagcacgggggtgtttgctttcggaggggtaccaggagggtcc
cccgcctcttctgccacgccctccatggcaccccaacccagtgcacctggaggtggcttt
aactttattgggtcaacaaagagcaccaccttcactgcagcccctgcaggacagaactca
atcgctagacgcaagatcaaaacggctgtccggcgtaagaagtaa
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