Oncorhynchus kisutch (coho salmon): 109907402
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Entry
109907402 CDS
T09179
Name
(RefSeq) collagen alpha-1(XXII) chain-like
KO
K16630
collagen type XXII alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
109907402
NCBI-ProteinID:
XP_031649344
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Position
LG17:27491666..27566496
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AA seq
1624 aa
AA seq
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MELRLACRASLVLVILALALSGQRVDAQSRAGCKNVHYDLVFILDTSSSVGKENFEKIRQ
WVSNLVESFDVGPDKTRVAVVRYSDRPTTEFNLGLYRTMDEVKRAARNIRYLGGNTMTGD
AISYTTTNIFTERAGARPAAKGIQKVAILLTDGRSQDYVLEPSKAAAKAGVRMFAVGIGE
ALKVELEEIVAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTS
YGLEEVPGFDLMEYFKVENILGSRFDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVT
TFKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNEEVD
NLFDRNWHKIALSVEAKAVSLYLDCKLIQTLPIGDREDIDIHGKTVIGKRLYDSVPIDFD
LQRMIIYCDSKHAELETCCDLPTGPCPKKVVTEAPPIEIPTPTPAGVEQQRGPQAVNCSC
PAGERGEIGVPGVAGPKGDKGDTGALGAAGPTGLKGAKGETGKVITVKGDRGEKGDPGSQ
GTSGDKGSNGEKGTSGAAGLAGKDGSKGERGDSGLAGDQGFPGPLGPKGIQGDSGLPGLS
GPRGVAGEKGLKGDKGSAGLRGDKGIDGFPGKPGVPGKDGLGGLTGAPGAAGLKGEKGET
GPAGMPGDMVQRDGLKGEAGPPGPRGPPGPDGPPGPPGATGQLGLPGEPGEFGQRGKKGE
SGLPGVDGLPGPPGSHGPPGGQGSPGQTGPPGLPGEIGFSGKPGEAGKAGLPGNDGLDGL
PGNDGAKGPRGESGLDGFPGKPGPKGKEGPPGPRGPGGEGGQVGLTGQPGVVGPKGEKGG
QGDRGQGGSLGPKGDKGDKGDTGPKGTPGIPGNVANVIPEPGEPGTPGERGEKGEQGNPG
DIGQRGVPGEQGFAGLPGPQGPKGDIGPKGETGRQGEPGPPGLQGTQGTRGLPGNVGIPG
TLGPPGIAGQRGERGEMGKEGRGGPPGPPGDTGIQGPPGLPGKGKDGQNGDPGQQGIEGQ
PGQKGQPGSQGLQGVPGNRGPPGEGKVGPPGPSGPNGAVGPAGMRGLSGVAGTQGPAGHN
GLPGRPGEKGSPGEPGAAADLSDLDLKDVCSECPAGAPGQPGLPGTPGDKGQAGPPGKNG
QDGYQGQAGPAGTSGPPGANGEKGVKGDRGPQGGPGDKGEIGHTGPPGHPGAAGIMGNPG
NNGQPGPIGPPGAPGEKGKEGMKGIQGPPGLPGLMGQMGKIGKDGRQGEQGESGKQGEPG
PQGQPGLRGMPGFKGHRGEPGPPGSKGEDGKEGRSGPEGKPGQDGNIGPLGPEGLAGRRG
ENGKPGEPGPSGKPGAPGTPGPAGAKGDPGNPGLPGFSGPKGPLGPTGPVGPEGKQGMSG
RAGERGVKGERGDSGGKGDKGAVGDPGMPGNPGPPGRKGHTGMMGMSGPPGEVGLTGPQG
TPGNPGQPGPRGESTSLETMRRLIQEELAKALDDKMAYLMAQIQPAHVKSTAGRPGPPGP
SGKDGSHGRPGPPGEPGMPGQNGGDGMRGPMGPKGERGSRGDKGENGVGQRGETGPSGPI
GPAGMPGYGKDGQPGAAGAQGEPGNPGPHGQPGPSGPTGQCDPSQCAYYASLGSRPHTKN
VKGT
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgactggcatgcagggcttccctagtcctggtcatactggcactggctctc
tcaggacagagggttgatgctcaaagcagggcaggctgtaagaacgtgcactatgacctg
gtgttcatcctggacacgtcgtccagtgtggggaaggagaactttgagaagatccgccag
tgggtctccaacctggtggagtcgttcgacgtgggcccggacaagacgcgtgtggccgtg
gtacgctacagcgaccggcccaccaccgagttcaacctgggactctaccgcaccatggac
gaggtgaagagggccgccaggaacatccgctacctgggagggaacaccatgaccggggac
gccatcagctacaccaccaccaacatcttcacagagcgggccggggccaggcctgcagcc
aagggcatccagaaggtggctatcctcctgacagacgggaggagtcaggattacgtgttg
gaaccgtcaaaggcggcggcgaaggccggggtgaggatgttcgctgtgggcataggggag
gctctgaaggtggagctggaggagatcgtagcagaacctaagaacgctcacgtgttccat
gtgacagacttcaatgccatcgacaagatcagagggcggctgaggagacggctctgtgaa
aatgtgctatgccccaatatgaaggtccaaccagaccgcttcaagcccaacagcaccagc
tatggattggaagaagttccagggttcgacctgatggaatacttcaaagtggaaaacata
ctgggatcaaggtttgatgagggccagagctcctatgttcgacttgggaccatgcctatt
gtacaacagacagaagacgtgttccctcaaggtctgccagatgaatatgcctttgtgacg
actttcaagttcaggaaaacctcgagacgggaggactggtacctctggcagatctttgac
aagtacggaattccacaggtgtctatccgtctggacggtgagaacaaggcagtggaatac
aatgcagtggggctgaccaaagacgcagtgagagctgtgttcaagaacgaggaggtggac
aacctgttcgacaggaactggcacaagatcgccctgagcgtcgaggccaaggctgtgtct
ctctacctggactgtaaactcatccagaccctgcccatcggggacagggaggacatcgat
atccacgggaagactgtgatcgggaagaggctgtacgacagcgtgcccattgactttgac
ctccagagaatgatcatctactgtgattccaaacacgctgagctggagacctgctgtgat
ttgcccaccgggccgtgccccaagaaggtggtgacggaggcccctcccatagagataccc
acccccacccctgcaggtgtggagcagcagagaggaccccaggcggtcaactgctcctgt
cccgctggagagaggggagagatcggtgtacctggggttgccggtcccaagggtgataag
ggtgatactggtgctctgggagcagctggacctactggcctcaagggagccaaaggagaa
actggcaaagtaataactgtcaagggagacagaggtgagaagggggatcccggtagccag
gggacatccggtgacaaaggatccaatggggagaagggaaccagtggagcggcaggtctt
gctgggaaagatggatctaaaggagaaagaggtgattctgggctggcaggcgatcaggga
tttcctggacctctgggaccaaagggaattcaaggagactcaggacttcctggtttatct
ggacctagaggcgtcgctggtgaaaaaggtttgaaaggagataaaggatctgcaggatta
cggggtgacaaaggtattgatggattccctggaaaacctggtgttcctggaaaagatggt
ttgggaggactgactggtgcacctggagccgctggcctgaaaggggaaaagggagagacg
ggccctgctggaatgcctggggatatggttcaaagagatggcttgaaaggagaggctgga
ccgccaggacctcgtggccctccaggacctgatggtccccctggaccccctggtgcaact
ggtcaacttggtttacctggcgaacctggagagtttggccaaaggggcaagaaaggtgaa
agtggattacctggtgttgacgggctacccggaccacctggttcccatgggcctcctgga
gggcaaggaagccctggacaaactggacctcctggtctacctggcgagattggattttca
gggaaaccaggagaggcaggcaaagcaggtttacctggaaacgatgggctggacggactt
ccaggcaatgacggagccaaggggcctagaggagagtctggattggatggcttccctggt
aaacctggtcctaagggtaaggaaggaccaccgggaccaagaggacctggaggagagggg
ggacaagttggtttaactggacaaccaggtgttgttggaccaaaaggagagaaaggagga
cagggtgaccggggacaaggcggctctctcgggccaaagggtgacaaaggtgacaagggt
gacacgggacccaagggaactccaggaataccaggaaatgtggccaatgttatccctgag
cctggtgagcctggaacacctggagagagaggagaaaagggagagcaggggaatccagga
gatattggtcaacgaggagtgcctggtgaacaaggctttgcgggactgcccggaccacag
ggacctaaaggtgacattggccctaaaggggagactgggagacaaggagagcctggtcct
ccaggattgcagggtacacagggtacccgtggactgcctggcaatgtgggcatccctgga
acccttggaccacctggaatagctggacagagaggagagaggggagagatggggaaggag
ggtcgtggtggccccccaggccctcctggagatacaggcatacaaggaccccctggccta
ccagggaagggcaaagacggacagaacggtgatcctggacagcagggaattgaaggacag
cctggccagaagggccaacccggatcccagggacttcagggggttccagggaacaggggt
cctccaggagaaggcaaagtcggacccccgggaccttcagggccaaatggtgcagttgga
cccgcgggcatgagaggtctgtcaggcgtcgctggtacacagggtcctgcaggacacaat
ggtttaccaggacgaccaggagagaagggatccccaggagagccaggagcagcagcagac
ttgtcggatttggatctgaaggatgtgtgttcagagtgcccagccggagccccgggacaa
cctggtctgccagggacaccaggggacaagggacaagctggacccccagggaagaatgga
caggacgggtaccaaggccaggcaggcccagccggaacctctggacccccaggagctaac
ggagaaaagggtgtgaaaggtgatagaggaccccaaggagggcctggagacaaaggtgaa
ataggccacaccggaccccccggccaccccggtgctgctggcatcatggggaatcctggt
aacaacggtcaacccggccccatcggtcccccaggagcccctggagaaaaaggcaaggag
gggatgaagggaatccaggggccaccaggtctaccaggcttaatgggtcaaatgggcaaa
attggcaaagatggccgccaaggagaacaaggagaatctggtaaacaaggagagccagga
ccacagggacaacccggactcaggggaatgcctggcttcaagggtcacagaggagagcct
ggaccaccagggtcaaagggtgaagatggaaaggaaggccgtagcggaccggagggtaaa
cctggccaagacggtaatattggaccacttggaccagaaggccttgctggccggagaggg
gagaatggtaaacctggtgaaccaggaccttcaggaaagccaggagcccctggtactcct
ggtcccgctggagccaagggagaccctgggaacccaggattaccaggctttagtggtcca
aagggacctttgggtcctactggtcctgtcggcccagagggaaaacagggtatgtcaggc
agagcaggagaacgtggagtcaaaggagagcggggcgactcaggtgggaagggagataag
ggagctgttggagatccaggtatgcctggtaacccggggcccccaggccgtaagggccac
acagggatgatgggtatgtccgggcccccaggagaggtgggacttaccgggcctcaggga
acacctggaaaccccggacaacctggaccacgaggagagtcaacatcactggaaacaatg
agaaggctgatccaggaggaactagctaaagcgttagatgacaaaatggcgtacctgatg
gcccagattcagccggcccatgtgaagagcacggcaggtcggccaggacctccaggcccc
tcggggaaagacgggagccacggtcgccccggtcccccaggggagcctggcatgccaggg
cagaatggaggagacggcatgaggggacccatgggtcctaaaggtgagagaggatccaga
ggagacaagggagaaaacggagttggacagagaggagagactggaccatcaggtcctata
ggtccagcaggtatgccaggctatggtaaggacgggcagcccggggcggctggagctcag
ggagaaccagggaatcctggcccccatggccagccaggccccagcggacccacaggacag
tgtgacccctcccagtgtgcctactacgctagtctgggatcacgaccccacaccaagaac
gtcaaggggacttaa
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integrated database retrieval system
