Oncorhynchus kisutch (coho salmon): 109907499
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Entry
109907499 CDS
T09179
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oki00535
]
109907499
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Others
109907499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
DUF4959
DUF4992
Motif
Other DBs
NCBI-GeneID:
109907499
NCBI-ProteinID:
XP_031649452
LinkDB
All DBs
Position
LG17:33086375..33166848
Genome browser
AA seq
1909 aa
AA seq
DB search
MPATGLKTWVWNPLLCLALISLSPAPAPAQGQVATPRRLRFKVLSATQLHVSWKEPKGDF
ESFRFIYSTQSDAEETELEVTKKEAKVIIDFDPRQLYTVKVTAVKGAQESKPLLGTFEAQ
LSEPDVKNVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRIN
FRLVRMFLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGG
NTLTGLALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVQPPARSLREAGIELFAIG
VKNADEKELKAIGSPPEETHVYNVADFSVMSSIVEGLTRTVCDRVEQLDKAIKGDTGPEV
TMAAPRDLVTSEVTARSFRVSWTHAPGTVEKYRVVFYPASGGQPEEKVVQGTVDTVVLNY
LLSLTEYQVAVFAIYASSASEALRGSTTTLALPMVNNLELFDITHNSMRARWRVAEGASG
YMILYAPLTEGDAADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQET
TLPLTPARNLRFSDVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLR
NLTSLTEYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLKTSEVSTESFRVTWEHSAQDV
VLYRLTWTPTRGGDTKEMLVNGNRNSHLLTGLRPITEYEVSLIAVFRNEEESDAVTLTES
TVARTTTTTKATTTTTTTRATTTAVVHLGARNLLLSDHTTFSMEVSWELQDRNVRQYRVA
YVTARGDRAEETKMVPGGQNSLLLQPLLSDTEYKVTVTPVYTDGDGPGVSRMGRTLPLSA
PRNLRVSEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMS
GTEYGVRVIASYTTGSSEALTGKARTLYLGVTNLNTYQVRMNSMCAQWSSHRHATLYRVV
IESLLNGHKQEARLGGGATRHCFNDLTANTQYKISVYAQLQDTEGPAVTTTERTFPAPTP
APTRPPTTTPPPTIPSTKEVCKAAKADLAFLVDGSWSIGDESFLKIIRFLYSTTGALDTI
GPDGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFT
VGGGIRRGIPKVVVVLTDGRSQDDVNKVSNEMQMEGYIVFAIGFADADYGELVSIASKPS
ERHVFFVDDLDAFQKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGH
VSGVSMEPGTFNSFPCFRLHNNSLHAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFAL
WEILNKDNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHLAIS
KTNAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKRDNSAPFQLQSFDIVCSTS
WASRDKCCELPGLRKEEDCPAMPRACTCTQDSKGPPGPTGPPGGPGIRGGRGDRGEPGAV
GPIGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSPG
REGQTGTRGLPGKDGPQGRTGPPGTMGTPGAPGSPGSSGPQGSLGDQGPPGSAGNKGEKG
ERGDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPASVRTIPGPPGEPGRQGGQ
GPQGEQGPAGRPGFPGSNGENGQPGARGLSGEKGDKGSPGVGVQGPRGPVGPPGPTGQGR
TGSQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGNGGDPSDHRNLP
LVQLPPNVYQNYDEVGEEDPYRYDAGGYPSEYYQPNYPAPRPVEPEDPALTQGDEVLRSP
GIHRSSRSLAEEEEEEKKKEEEGPEEKKMVGPMRERRLRRALRRSGTHD
NT seq
5730 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctacaggactgaagacgtgggtatggaatcctctactctgtctggctcttatc
tctctctcacctgcaccagctccagctcagggtcaagttgccactccacgaagacttcgt
ttcaaggtcctgagcgcaacccagctgcatgtgtcatggaaagagccgaaaggagacttt
gaaagcttcagatttatttatagcacacaatcagatgcagaggagactgaactagaggtg
acaaagaaggaagccaaagtgatcatagactttgaccccagacagttatacacagtcaag
gtcactgctgtgaaaggtgctcaggagagcaagccacttctaggaacatttgaggcccaa
ctttcagagcctgacgttaagaacgtacagccccagaatgtacgccccaaaaaccagaaa
gacaccagtgtcacagaggagaacaatgagatatctgaagagcagttcatgtgtaagaca
ccggccatagcggatattgtgatcctggtggacggatcatggagtatcggacggataaac
ttccgtctggtccgcatgttcctggagaatctggttagcgccttccatgtggagtttgac
aagacacggataggtctggcccagtatagtggtgatcccaggattgagtggcacctgaac
actttcaccaccaaagaagcagtcatcgacgctgtgaagaaccttccttacaaaggaggg
aacacactgacgggtcttgcattgacgtacatccttgagaacagttacaaacccgagtcc
ggatccagggccggcgttcccaaaattggaatcctgatcacagatgggaagtctcaagac
gatgtccaacccccggcgcggagtctgagagaggcgggaatagagctgtttgccattggt
gtgaagaacgccgatgagaaagagctgaaggccattggctctcctccagaggagacgcac
gtctacaacgtggctgacttcagcgtcatgagctccatcgtggagggtctgaccaggacc
gtctgcgaccgggtcgaacagcttgacaaggccatcaaaggcgacacaggcccagaagtc
accatggccgctcccagagacctggtgacctcggaagtgacggccaggagtttccgggtg
tcgtggacccacgcccctggcacggtggagaagtaccgggtggtgttctaccctgccagc
gggggccagcccgaggagaaggtggtgcagggcacagtggacacggtggtcctcaactac
ctcctctccctgactgagtaccaggtggctgtgttcgccatctacgccagctcagctagc
gaggccctccgaggcagcactaccacattggccctacccatggtgaacaacctggagctg
tttgacatcacccacaatagcatgagagcccgctggagggtcgcagagggggcttctggc
tacatgatcctctatgctccactgaccgagggagacgccgcagacgagaaggaggtgaaa
gtcgctgagactgtgaacgaagtggaactggagaacctgactccagacacagagtacaca
gtgaccgtgtacgccatgtacggagaggaggccagtgaccctatgaccagtcaggagacc
acgctacccctgaccccggcgcggaacctgcgcttctccgacgtcgaccacagctcggcc
aggctcacctgggaggcgacgtccaagaaggccaacggctatcgcatcatgtacgtcaag
acaaacggagtgcagaccaatgagatggatgttggccgcatcaccaccctgttgctaagg
aacctgacgtcattgacagagtacacggtggccatctttgctatctatgacgagggccag
gcagagccccttactgacagcttcaccactaagacagtcccagagcctctgaacctaaag
accagtgaagtctccacagagagcttcagggtcacctgggaacactcagcccaagacgtg
gtcctctacagactcacctggaccccaaccagaggaggagacactaaagagatgctagtg
aatggtaacaggaacagccacctgctgactggactgaggcccatcactgagtacgaagtc
tctctgattgctgtctttagaaacgaggaggaaagcgacgccgtgaccctcacagagtca
acagtggcaagaacaacgactaccacaaaagctactacaaccacaactaccacacgagct
accaccacagcagttgtgcatctgggtgcgaggaacctcctgcttagtgatcacaccacc
ttcagcatggaggtgtcctgggagctgcaggaccgcaatgtgcgtcagtaccgcgtcgcc
tatgtcaccgccaggggcgatcgtgccgaggagacgaaaatggtccccggtggtcagaac
agcctgctgctgcagccactgctgtctgacacggagtacaaggtgacggtcaccccggtc
tacaccgacggagatggccccggtgtcagccgcatgggacgcaccttgccactgtctgct
ccaaggaacctgagagtgtcggaggaatggtacaaccgcttccgtatcacctgggacaca
cccccatccccaactatgggctacagggtcgtctacaaacccatctctgctccgggacct
gctctggagacctttgtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagc
ggtacagagtacggcgtcagggtcatcgcctcctacaccaccggctccagcgaggccctc
actggcaaggccaggacactatacctgggagtgaccaatctgaacacctaccaggtgagg
atgaacagcatgtgtgcccagtggagttcccaccgccacgccactctgtaccgtgtggtc
atcgagtcgctgctcaatggacataaacaggaggcaaggctgggaggaggagccacccgg
cactgcttcaatgacctgaccgctaacacgcagtacaaaatcagtgtgtacgcccaactc
caggacacagaggggcctgcagtcaccaccacagagagaaccttccctgctcccaccccg
gcacccaccaggccgcccactaccacccctcctcccaccataccctcaaccaaggaagtt
tgcaaggcagccaaggcagacctggcgttcctagtggatggctcctggagcatcggggat
gaaagcttcctgaaaatcatccgcttcctgtacagcaccacaggagcccttgacaccatt
ggaccagatggcactcaggtggccattgtccagtttagtgacgatgctagaaccgagttc
aaactcaactcctacgacaacaaggagaggctactagaggccattaaccgcatctcctac
aagggagggaacaccaagacagggctagccatccggcatgtgaaagacaccatcttcacg
gtggggggagggatccggaggggcatccccaaagtagtggtggtgttgactgacgggcgc
tctcaggacgatgtcaacaaggtctccaacgagatgcagatggaagggtacattgtcttt
gccattggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcccagc
gagagacacgttttctttgtggacgatttagatgccttccagaaaattgaggaaaagctg
gtcacctttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagt
accttgccaggtttcaggatgatggagatgtttggcctggtggagggtctgtatggacat
gtatcaggagtgtccatggagcctggcaccttcaacagcttcccctgctttcgactgcac
aacaactccctccacgcccagcccaccaagtttatccaccctgagggcttgccctctgat
tacaccatcaccatgctgttccgcctgctgcctgaaacccccaaagagccctttgcattg
tgggagatcctcaacaaggacaatgagcccctggtgggcgtcatcctggacaacggtggc
aagaccctcaccttcttcaaccacgactacaaaggacagtttcagactgtgaccttcgag
ggacctgaaatcaagaagctcttctacggcagtttccacaagctgcacctggctattagc
aagaccaacgccaaggctgtcatcgactgtaagctggttggggagaaggccatcaacgcg
gcgggcaacatcaccacagatggcctggaggtgctgggacgaatggtgcgctcccggggg
aagagggacaactctgcaccgtttcaactgcagtcgtttgacatcgtctgcagcacgtcc
tgggccagccgagacaagtgctgtgagcttcctggtctgaggaaggaggaggactgtcct
gccatgccccgggcctgcacctgcacacaggacagcaaaggcccccccggccccactgga
ccccctggaggtcctgggatcagaggagggagaggggaccgtggagaaccaggagctgtg
gggccgataggtccagttggggacgctggcactcctgggctgcaggggccccctggcccc
cagggccccagtggccgcaccatcatgggccccccgggtggtccaggagagagaggtgag
aagggtgcagctggcgctccaggaatacagggcattcctgggtctcctgggtcaccaggt
cgagagggacaaacaggaacaaggggactgcctggtaaagatggaccccaggggcgaaca
ggtcctccagggactatgggcactccaggagctcccggctcaccagggtcaagtggacct
caagggtcactgggagaccaaggacctcctggttccgccggaaacaaaggagagaaggga
gaaagaggtgacctgcaatcccaggcatcggtccaagcaatcgcccggcaggtctgtgag
cagctgatacagagtcacatggctcgctacagctccatcctcaaccacatccccagtgca
cccgcttcggtccgcaccattcctggacccccaggagagcccgggcggcagggcggccaa
ggaccacagggagagcaggggcccgcgggcagaccagggttccccgggtccaacggagag
aatggacaaccaggagccagaggtttgtcaggagagaagggtgacaagggaagcccaggt
gtaggagtccagggtcccagaggccccgtaggacccccaggaccaacgggtcaggggcgg
acaggtagccagggtccgtctggtcggccggggaaccctggaactcctgggcggccgggt
atccctggaccagtggggtcggctggacctcctggatactgtgaccagaactcttgcgtg
ggctacaacgtaggagagggtggcaacggtggtgacccatctgaccaccgcaatcttccc
ttagtccaattgccccccaacgtctaccagaactatgacgaggtgggggaggaggacccc
tataggtacgacgcagggggctacccctccgagtactatcagcccaactacccagcgccc
cgaccagtcgagcccgaggacccagccctgactcagggcgacgaggtgctgaggtccccc
gggatccaccgctcctccaggagcctggctgaagaggaggaggaggagaagaagaaagag
gaagaggggccggaggagaagaaaatggttggtcccatgagagagaggaggctaaggaga
gccttgaggaggtcggggacacacgactga
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