Oncorhynchus kisutch (coho salmon): 109907520
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Entry
109907520 CDS
T09179
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03320
PPAR signaling pathway
oki04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
109907520
03320 PPAR signaling pathway
109907520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109907520
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oki03310
]
109907520
Transcription factors [BR:
oki03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
109907520
Nuclear receptors [BR:
oki03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
109907520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
109907520
NCBI-ProteinID:
XP_020361106
Ensembl:
ENSOKIG00005046964
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Position
LG17:33508973..33532223
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AA seq
471 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGQRSPPLTPTAAAMTSLPPVTSAVNSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPFGLGGHSPGGPMLSQK
RLCAICGDRSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRY
QKCLACGMKREVVQDERQRSVQEERQRNKERESEVESTSAINEEMPVEKILEAEMAVEQK
TELHADGSSGDSSVNPNDPVTNICQAADKQLFTLVEWAKRVPHFSELALDDQVILLRAGW
NELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLT
ELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLESYCKQRYPDQ
QGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagcagagattcccgcagcccagatagctcctctgtgtcctcccctccctcg
ggccagcgctcgccacccctgacccccacagctgctgccatgacttctctgccgcccgtc
acttcggccgtcaacagccccatcagcagcatgggctcgcccttctctgtgatcagctcc
tccctggggtcgccctgcctgcccgggacaccctcggtgggctacggccccatcagcagc
ccccagatcaactccacagtgtccatgtcggggctgcacgcggtcagcagctcggatgac
gtgaagcctccattcgggctgggaggccacagcccagggggccccatgctctcccaaaag
cgcctgtgtgccatctgtggtgaccgctcctccggtaagcactacggagtgcacagctgc
gagggctgcaagggtttcttcaagcgcacggtgcgcaaggacctgagctacacctgccgg
gacaacaaggactgcctggtggacaagcgccagcgcaaccgctgccagtactgccgctac
cagaagtgcctggcctgtggcatgaagagggaagtggtccaagatgaacgacagagatcc
gtgcaggaagagcgccagaggaacaaggagcgggagagcgaggtggagtcgaccagtgcc
atcaacgaggagatgcctgtggaaaagatcctagaggcagagatggccgtggaacagaag
accgagctgcatgccgatgggagctccggggacagctcggtaaatcccaacgacccagtc
accaacatttgccaggctgcagacaagcagctgtttaccctggtggagtgggccaagagg
gtcccccacttctctgagctggccctggacgaccaggtcatcctgctacgtgccggttgg
aacgagctgctgatcgcttccttctctcaccgctccatcagtgtgaaggacggcatccta
ttggccaccggcctacacgtgcacaggaacagcgcccacagtgccggcgtgggagccatc
ttcgacagggagagtgcgcacaatgcagaggttggagccatatttgacagagttctcacg
gagctggtcagtaagatgagagacatgcagatggacaagacggagctcggctgccttcga
gccatcatcctcttcaacccagatgccaagggcctgtccagccccagtgaagtggaattg
ctgagggagaaggtgtacgcatcgctagagtcctattgtaaacagagataccccgaccag
cagggcaggttcgctaagctcctcctccggctgccagcgctgcgctccatcggcctgaag
tgcctggagcacctgtttttcttcaagctgattggcgacacccctatcgacacgttcctc
atggagatgctagaggcgccccaccagctgacctaa
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