Oncorhynchus kisutch (coho salmon): 109907564
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Entry
109907564 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X4
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109907564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109907564
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109907564
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109907564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
109907564
NCBI-ProteinID:
XP_020361191
Ensembl:
ENSOKIG00005040384
LinkDB
All DBs
Position
LG17:complement(35201967..35218292)
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AA seq
934 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPATYTTENSEDDKK
RGRSTDSEISQSPVKNGNPSSSLSSSSSSSSSSSSSSASGASSGAASSSLVSMVTIAGGG
QANAGGNNNSLLGNMGGLLSNSGSYSDATQQQLQQHHQTQQARNSILSSNASSSPSNNIL
LPSPSASSPAISSTALTPNTQPQAPSRPSPGSTLGLGLGLGLGKGGMSGSPAVSQMSGLG
LSGMPASLNTMAGLLAGSTSAPYAMAAAGSGTIGSPLAGKISSLSTSSTNSSAVGPVSGL
SDRSTGLLGSVPGAVGVSGGILGLGSGQSTVQGPPLVSPSPIGGGLAPGSSLGAIGSIGG
NSGSGAPSNSLGIGGGNAAIARPPSGQKQNGSTSYSAVVADSTPDSALNIANQLQSSQPS
SLISTTNQLKDSGPSLLGSMTLPTSTPSPSYIESKPSGSSMLNGPLSYTQASESMKPQEP
LSTVKSMAEQAALGSAMEGELPPLHLTTDIFPSTTAPPGPPSAPQQPSLSEVSIPPSLGV
CPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDS
VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
EQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagttacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
caaatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcggttcaagatcgtggaacgagagaccaagaca
aaggcttactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggat
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaaacaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtgtctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccattcccgccacgtacactacggagaactctgaagatgacaagaaa
aggggacgttcgacagacagtgaaatcagtcagtcacctgtcaagaatggcaacccctct
tcgtcgttgtcttcatcgtcctcatcctcctcgtcctcctcttcgtcatctgcctctggc
gcctcctcgggagcagcctcttcctcgctggtctctatggtgaccatcgccggaggtggc
caggccaacgctgggggcaacaacaacagccttctgggcaacatggggggtctcctctcc
aactctggcagctacagcgacgctacccagcagcaacttcagcagcatcaccaaacgcag
caggccagaaactcaatcctctcctccaacgcctcctccagcccctcaaacaacatcctt
ctccccagcccctccgcctcctcgcccgccatctctagcacagccctcacacccaacacc
cagccgcaggctccgtcaaggccctctccgggctccaccttggggctcgggttgggcttg
ggccttggtaaaggcggcatgagtgggtcaccggctgtcagccagatgtcaggccttggc
ctgtcagggatgccggcgtccttaaacaccatggccggactcctggcgggctccacttcg
gccccctacgccatggcagcagcaggctccgggaccataggaagcccccttgcagggaaa
atcagcagcctgagcactagcagcactaactccagcgcagtgggaccggtgagcggactc
agcgacaggtccacgggccttttgggctctgtgcccggtgcagttggtgtcagtggtggg
atcctaggccttggctcaggacagtcgacagttcagggccctccactggtgtcccccagt
cccataggagggggcctggcccctggaagcagcctgggagctataggaagcattggaggg
aactctggatcaggggcgccaagtaacagcttgggcatcggaggaggaaacgcggcaatc
gcaaggccacccagtggacagaagcagaatggtagcactagttacagtgctgtagtagca
gacagcacaccagattctgccctcaacattgccaaccaattacaaagcagccaaccctcg
tctttgatctccaccaccaatcagcttaaagacagtggccccagccttttagggtccatg
accctacccaccagcactccctcgccatcctacattgagagtaaaccttcaggcagcagt
atgctcaacgggccgctctcctacacacaggcctctgaaagcatgaagccccaggagcct
ctgagcactgtgaagtccatggccgaacaagcggcactgggctcagcaatggagggagag
ttgccccctctgcacctcaccacagacattttccccagcactacagcgcctccagggcct
ccctcggccccgcagcagccctcgctctcggaggtcagcatccccccatcgctgggtgtg
tgcccgctggggcccgtacccctgtccaaagaccagctgtaccagcaggccatgcaggag
tcggcctggacgcacatgccccacccctccgactcagagcggatcaggcagtacctgatg
aggaacccgtgtcccaccctgcctttccaccaccaggtgccacccccccactccgactct
gtggagttctaccagagactgtccacggagacactgttcttcatattctactacctagag
ggcaccaaggcccagtatctggcagccaaggctttgaagaagcagtcgtggcggttccac
accaagtacatgatgtggttccagaggcacgaggagcccaagaccatcacagatgagttt
gagcaggggacgtacatttacttcgactacgagaagtggggacaacggaagaaggaagga
ttcacgtttgagtacaggtaccttgaagaccgagacctccagtga
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