Oncorhynchus kisutch (coho salmon): 109907626
Help
Entry
109907626 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109907626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109907626
03036 Chromosome and associated proteins [BR:
oki03036
]
109907626
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109907626
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109907626
mRNA degradation factors
5'-3' decay
Decapping complex
109907626
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109907626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109907626
NCBI-ProteinID:
XP_031649638
Ensembl:
ENSOKIG00005017435
LinkDB
All DBs
Position
LG17:complement(38329277..38382892)
Genome browser
AA seq
492 aa
AA seq
DB search
MAAARTENLGPVVMGLNKQKGQLRGPPKPASPQSGPLVLGSLSDEATGASQKAGAAQEGT
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKNLYVAEFHTANLDCEVEE
ELKETGCQQEEP
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccagaacagagaaccttggtcctgtcgtcatgggactgaacaagcagaaa
gggcagcttagggggccgcctaaaccggcttctccccaatcaggacccctcgtcctgggc
tctctgtcagacgaggccacaggtgcatcccagaaagcgggtgctgcccaggagggaact
gggattaggtttggagatgactggaaaaagagcctacagctccctcccaaagacaccagg
gtcagaacctctgatgtaacgtccactaagggaaatgagtttgaggactactgtcttaaa
cgggagctcctgatgggcatctttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccctgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggactat
atacaggccattgtgatggtgcccactcgtgagctggccctgcaggttagccagatcagt
atccagatcagtaagcacctgggcggtgtgaaggtcatggccaccacgggcggcaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcatagccacacccggc
aggatcctagacttgataaagaagggcgttgccaaagtggatagagtccaaatgatggtg
atggatgaggcagacaagctgctgtctcaggactttgtagtgctcatcgaggatatcatc
agcttcctggccaagggccgtcagatcctactctactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcagaagccctatgagatcaacctgatggaggagctg
actctgaagggcatcacccagtactatgcctacgtcactgagagacaaaaagtccactgt
ctcaacacgctcttctcgcggctgcagatcaatcagtccattatcttctgtaactccacc
caaagagttgagctgctggccaagaagatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaatcgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcaccgatctgttcaccagaggtattgacatccaagccgtcaat
gtcgtcatcaacttcgacttccccaagaacgccgagacatacctgcatcgcattggaaga
tcagggaggtttggtcacctgggcctggccatcaacctgatcacctctgaggaccgcttc
aacctgaagtccatcgaggaccagctggtcaccgacatcaagcccatccctggcagcatc
gacaagaacctgtacgtggccgagttccacaccgccaacctagactgcgaggtggaggag
gagctgaaggagacaggctgccaacaggaggagccctag
DBGET
integrated database retrieval system
