Oncorhynchus kisutch (coho salmon): 109907708
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Entry
109907708 CDS
T09179
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1-like
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04621
NOD-like receptor signaling pathway
oki05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109907708
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109907708
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oki04054
]
109907708
Pattern recognition receptors [BR:
oki04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
109907708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
NOD2_WH
LRR_4
LRR_6
AAA_16
AAA_22
NPHP3_N
AAA_18
ATPase
AAA_30
AAA_29
NTPase_1
Motif
Other DBs
NCBI-GeneID:
109907708
NCBI-ProteinID:
XP_031643411
Ensembl:
ENSOKIG00005003244
LinkDB
All DBs
Position
LG2:complement(12354988..12361124)
Genome browser
AA seq
954 aa
AA seq
DB search
MHIMGSSAEEARAGQTGHVSTIQMLTLHRELLVSQVKSTQCILDNLLQIGFLCIEDTEII
QRSATKTDQVRKILELVQSKGEQACEYFLYILYKVYDAYIDLQPWLKEINYQPPDFIRDI
PVKNTDPISRYCEKLRHELGRDTRFIASYTKREETQLEELYTDTLMELLNDRNECLGHLE
GLEQLLGEQGVFNPQAETVLITGDAGVGKSILLQKLQRLWSNRELEQTDAMFFFKFRCRM
FSTFKVTDEISLRDLLFKYNCYPDQDVDNEVFSYILRFPEKVLFTFDGYDEIQADLDLEN
MPEVVSPEERTHPLLVLINLLCGKLLNGSRKVLTARTGTEVQSRVIRKRVALRGFSPAHL
QTYTNLHFKEQEHRDLVSVQLDASPHLCGLCSIPLFCWIVFKSFKHLSSVYDDFELPEAC
VTLTNIFLLLSEVFFSRGAAPPPGLLTRNTRCPADTFRAGLRPLTAFSKLALLGMERGGF
VFDQEEVTSCGLTEDDLQVGFLRPVSRYDACGNPSTFEFFHLTLQSFLAAFSLVLDEQAS
EGNILKFFTECSRRDNTSCLSCVFPCIGGSSKPRGKDPFKTNEHLQYANLFLCGLLSKAN
AGLLEHMVPPALLKRKRAVLKSYLSTSVRSHLRGLPLHSTEQEGSKVHVLPNFLWMLRCI
FETGSKEVAQLTAKGITADYIKLGYCNVSSGDCSALNFVLQHRRKRLGVDMDNNNISDYG
VKQLRPSFSKMTVVRLCVNQISDSSVEVLAEELIKHRVVEVLGLYNNLITDIGAKLIAHI
IEECPKLRVVKVGSNKFTSVGGRYLASAIQKSTSIFDVGMWGNSIGDEGARAFAEALRNH
PSLTNLSLSANGITSEGGRHLAKALKCNTMLRIFWLVQNELSDDVAPDMAELIRSNTGLS
HLWLINNQLTVDGIRQLSEALSHNTSLKEICLKGNCLSEEEEKLFEAEGRLRFH
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgcatattatgggctccagtgccgaagaagcccgtgctggacaaacgggccatgtgtcc
actatccaaatgctcaccttgcaccgtgagctactagtttcccaagtgaagagcacgcag
tgcattctggataacctcctacaaattggctttctgtgtattgaggatacagaaatcatc
cagcgctcagccaccaagacagaccaggtgcgtaaaatcctggaattggtccaaagcaaa
ggggagcaggcatgtgaatacttcctatatattctctacaaagtttatgatgcatacata
gacctccaaccatggcttaaagagatcaactaccagccaccagacttcatacgggacata
ccagtgaagaacacggaccctattagtaggtactgtgagaagctgaggcacgagctgggc
cgagacacacgcttcattgcatcctacaccaagcgagaggaaacccagctggaggagctc
tatacagacaccctgatggagctcctgaatgaccgcaatgagtgcctgggccacctggag
ggtctggagcagctcctgggagaacagggtgtctttaacccacaggcagagacggtgctc
atcacgggggatgctggggtgggcaagtccatcctcctccagaagctccagaggctgtgg
tccaatagggaactggaacagacagacgccatgttcttcttcaagttccgctgtaggatg
ttcagcacattcaaggtgacagacgagatctcactcagggacctgcttttcaaatacaac
tgctaccccgaccaagatgtggacaatgaggtgtttagctacatcctccgcttccccgaa
aaggttctctttacgtttgacggctatgatgagatccaggctgatctggacctggagaac
atgcctgaggtggtttctccagaggagaggactcacccccttctggtgctcattaacctg
ctctgtgggaagctgctcaatggttcccggaaagtccttactgctcggacaggcaccgag
gtccagagcagggtgatccggaagagggtggcactgcgtgggttctctccagctcacctt
caaacctacaccaacctacacttcaaagagcaagagcacagggacctggtctcagtccag
ctggatgccagcccccacctctgtggcctctgctccatccccctcttctgctggatcgtc
ttcaagagctttaaacacctgagctcagtctacgacgactttgagttgccagaggcttgc
gtgaccctcactaacatattccttctgctttctgaagtcttcttcagccggggggccgct
cccccaccgggcctcctgacgagaaacaccaggtgccccgctgataccttcagggcaggg
ttgaggccactgacagccttctccaagctggctctgctgggcatggagagaggaggattt
gtgttcgaccaggaggaggtgacctcctgtggcctgactgaggacgaccttcaggtgggt
ttcctccgaccggtcagccgctacgatgcctgtggaaacccttctacctttgagttcttt
catctcaccctacagtccttcttggctgcattctccctggttctggacgaacaggccagc
gaaggcaacatcctcaagttcttcaccgagtgcagcaggagggacaacacatcttgttta
tcgtgtgtcttcccctgcatcggtggctcctccaaacccaggggaaaggacccgttcaag
accaacgagcatctccagtacgccaacctcttcctgtgtggactgctgtctaaggccaat
gccggcctgctggagcacatggttcctccagcgctgctgaagaggaagcgggcggtcctc
aagtcctatctgtccaccagcgtgaggtcccacctccgcggtctgccactccacagcaca
gagcaggagggcagcaaggtgcatgtcctgcccaacttcctgtggatgctgcgctgcatc
ttcgagacaggaagtaaagaggtggcccagctgactgcgaagggaatcacagctgactac
atcaagctgggctactgtaatgtgtcctctggcgactgcagtgccctcaactttgtgctg
cagcaccggcgtaagaggctaggggtggacatggacaacaacaacatcagtgactatggg
gtcaagcagctcaggccttcattcagtaaaatgaccgtggtgaggttgtgtgtcaatcag
atctcagacagcagcgttgaagtactggctgaggagcttatcaaacacagagtggtggag
gttttgggactttacaataatctcattacggacatcggagccaaactaattgctcatatc
attgaggaatgtcctaagttaagagtcgtcaaggttggaagcaacaagttcaccagtgtg
ggtggcaggtatctggccagtgccattcagaagagcacatctatctttgacgtgggaatg
tgggggaacagtattggtgatgaaggagcaagagcattcgcagaggccctgaggaatcac
ccaagtcttaccaacctcagcctctcagccaatggcatcacttcagaaggtgggaggcac
ttggccaaagcactaaaatgcaacactatgctcagaatcttctggttggtgcaaaacgag
ttgtcagatgatgtagcaccagacatggcagagctgatcagatccaacacgggtctatct
cacctctggttaatcaataatcagctgacagtggatggaatcagacagctgtcagaggct
ctctcccacaacacatcactcaaagagatctgtttgaaaggaaactgtctttctgaagag
gaagagaagctgtttgaggcggagggaaggctacgcttccactga
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