Oncorhynchus kisutch (coho salmon): 109908024
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Entry
109908024 CDS
T09179
Symbol
exosc10
Name
(RefSeq) exosome component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109908024 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109908024 (exosc10)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
109908024 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
109908024
NCBI-ProteinID:
XP_020361983
Ensembl:
ENSOKIG00005012166
LinkDB
All DBs
Position
LG17:60409522..60422199
Genome browser
AA seq
914 aa
AA seq
DB search
MLVLSIKPNGEEEKPSAVASCHSHVQKLEMDSSNSDKQNNNQSVNEDPAGVDNEFCPGFK
DVDAFVKYGLGTVVAATKASASLPQVGDEYDLYRSFPGFQEFCETQGDGLLHCMSQIMHH
HGCRAHMRDRNKLTGLEERFDLVVDSNDVILEKVGILLDDAAGVNRSQQPVMPAGFQPPK
IVVSSWNRKGGDSGSGRSSETFRLLQAKNVTRPQLKFREKVDNSNTPFTPKIFVKPNAIK
PLPSYFTNKHIRKERPEDLDVPAALADFIHQQRTQEHVEDMFAHPYQYELDHLALPEHLL
SKPEPQMYKPLAETKCSFIDNLEDLVAVNEKLAKTSEFAVDLEHHSYRSFLGITCLMQIS
TRDEDFIIDTLELRSELYILNEAFTDPAIVKVFHGADSDIEWLQKDLGLYIVNMFDTHQA
SRTLNLGRHSLDHLLKLFCNVDSDKRYQLADWRIRPLPDEMFQYARADTHYLLYVYDRLR
VDLWEVGNGQPALLQMVWHKSKDISLKKYMKPLFTEDSYMDLLRKQKKAFNTQQLTAFRL
LYGWRDKLARQEDESTGYVLPNHMMIKISDILPKEPQGIIACCNPVPPLVRQQVNELHLL
VQQAREMPLLKAEIVADKKKTLTPIKKPEIPLFGPHDTSRVSESDIPSFTPDKLSTKKGA
LFSEEEQGEEVDMHKMMGLVVSAKITLFEEDTVKDPGHLTVAQQKACRVVESFQNPFRMY
LPSNDIHISKNAKFDPSTKIYEISNRWKLQSVEQQQKEVEAKKKAKEEAKAVAEERKKAK
QSYQESLQNVATVRQQASESIKPGGKKRERVASETGESTPKPNKKLMKAAVKKNEDSTTP
LVFKPYDYSQSDFKVFAGAKGNDGKQFDPDRQGHEPRKKKNAKAQKSNACAGNRSMSFFG
GKSERGVCRNWPKS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgttagtgttatccataaaacccaacggtgaagaagaaaaaccaagcgcggttgcttcc
tgccactcgcatgtacagaaattagagatggattcttcaaacagtgacaaacaaaataat
aatcaatctgttaacgaagacccagctggtgtggacaacgagttttgtcccggtttcaag
gatgtggatgcatttgtgaagtatggactgggcactgtcgtagcagctaccaaggcatct
gccagtctaccgcaagtaggggatgaatatgacttatatcgcagcttcccgggatttcaa
gaattctgtgaaactcaaggagatggactgttgcattgtatgagtcagataatgcaccac
catggctgcagagctcacatgagagaccgcaacaaactgacggggttggaggaaagattt
gacttggtggttgactccaatgatgtcattcttgagaaagtgggtattctgcttgatgat
gctgccggagtcaacaggagccagcaacctgtcatgcccgcaggttttcagccccctaag
atcgtcgtatccagttggaatcgtaaggggggtgactctggttctggacgtagttcagag
acattccgactcctccaagccaaaaacgtcaccagacctcagttgaaattccgggaaaaa
gttgacaatagcaacacaccgtttactccaaagatcttcgtcaagcccaatgcgataaaa
ccacttccttcatattttaccaacaaacacattcgcaaagagagaccagaggatttggat
gtccctgccgccctggctgatttcattcaccagcagagaactcaggagcatgtagaagac
atgttcgctcacccataccaatacgaactggatcaccttgcgttacctgagcatcttctg
tccaagcctgaaccccagatgtacaaaccacttgctgagacaaagtgctcattcattgac
aatctggaggatctggtggcagtaaacgagaaactggccaagacgtcagagtttgcagta
gatctggagcatcactcctacagaagttttttgggcatcacctgcctgatgcagatttca
acacgggatgaagacttcattatagacaccttggagctgcgtagtgagctgtacatactc
aatgaggctttcacagatcccgccatcgtcaaggttttccatggtgccgactccgatatt
gagtggctgcaaaaggatttgggcctttacattgtcaacatgtttgacactcaccaggcg
tcacgaacccttaacctgggcaggcactcgcttgaccacttgcttaagctgttctgcaac
gtggactctgacaaacgctaccaactggcagactggagaatacggcctttgccagatgag
atgtttcagtatgcccgggcagatacccactacctcctctatgtctacgatcggctgagg
gtggacctgtgggaagtgggcaatgggcagcctgccctgctgcagatggtctggcacaaa
agcaaagacatctcattgaagaaatacatgaagccgctcttcaccgaggactcctacatg
gacctgctgaggaagcagaagaaggcgttcaacacgcagcagctaactgccttccgactg
ctgtacggctggagggacaagctggccagacaggaggatgagagcactggatatgtcctg
cccaatcatatgatgattaagatctctgacatcctgcccaaagagcctcaaggcatcatc
gcttgctgtaaccctgtccccccattggtgcggcagcaggtcaacgagctccacctattg
gtgcagcaggcccgggagatgccccttctcaaggctgaaattgtggctgacaagaagaaa
acactcacgcccataaaaaagccagaaattcctctttttggtcctcatgatacatccaga
gtctctgaaagtgatatccccagctttaccccagataaactctcaaccaaaaagggggca
ctcttttctgaagaggagcagggagaggaggttgacatgcataaaatgatgggtctagta
gtttcagcgaaaatcacattgtttgaggaggacacagtcaaagaccctggtcacctcaca
gtggctcaacagaaagcatgcagggttgtagagtcttttcagaaccctttccgaatgtat
ctaccgtcaaacgacatccatatctccaaaaatgctaagttcgacccctctacgaaaata
tatgagatcagtaatagatggaagctgcagagtgtggagcagcagcagaaggaggtagag
gccaaaaagaaagcgaaggaagaggcaaaggcagtagcagaggaaaggaagaaggccaag
cagagctaccaggaatcacttcagaatgttgcaactgtgcgccagcaagcttcagaatct
ataaaaccaggaggaaagaaaagggagagggttgccagtgagacaggagagtcgacccca
aaacctaacaagaaactaatgaaagctgctgtgaagaaaaacgaggactctacaacacct
ctagttttcaaaccgtatgactacagccagtcagatttcaaagtctttgctggggccaaa
ggaaatgatggtaaacagtttgatccagacagacaaggtcatgaacccaggaaaaagaaa
aatgcaaaagcacaaaaatcgaatgcctgtgctgggaaccgaagtatgtccttttttggt
ggaaaatccgaaagaggagtctgtcgtaactggcctaaaagttag
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