KEGG   Oncorhynchus kisutch (coho salmon): 109908480
Entry
109908480         CDS       T09179                                 
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109908480 (exosc7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109908480 (exosc7)
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109908480 (exosc7)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     109908480 (exosc7)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 109908480
NCBI-ProteinID: XP_020362720
Ensembl: ENSOKIG00005023678
UniProt: A0A8C7MI37
LinkDB
Position
LG17:complement(40179360..40188481)
AA seq 291 aa
MATVQVSEAEKVYILHGVRDDLRVDGRGCEDYRHMEIETDMVSNTDGSAKVTLGHTDVLV
GVKAEMGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGDELGMELSNTLYKVFNNRYSVD
LKSLCISRGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHISEDEEGGKEI
ELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIISVTHKGTVTCVR
KVGGGSLDPESIFEMTETGKRVGKALHAPLMELLQEEESLGKKRQKVGFLG
NT seq 876 nt   +upstreamnt  +downstreamnt
atggctactgtacaagtcagtgaggctgaaaaggtgtatattttgcatggtgtacgggat
gacttacgggttgatggacgaggatgcgaggactacagacacatggagattgagacagac
atggtgtcaaatacagatggctcagccaaagtgacactggggcatacagacgtgctagtg
ggagtcaaagctgaaatgggaaagccaaggcccatggtcccagatgaaggctacctggag
ttttttgttgattgctctgccaatgccacaccagaatttgagggtcggggtggtgatgag
ctgggcatggagttgagcaacaccctgtacaaagtgttcaacaacagatacagtgtggac
ctgaaaagcctctgcatcagccgaggggagcactgctgggtgctctatgtggacgtgctg
ctcctgcagtgtgatggaaatctttttgatgccatctctgttgcaattaaagcagctctc
ttcaatacaaaaattcccaaagtgcacatctctgaggatgaggaaggagggaaggaaata
gagctgtcagacgacccctacgactgcatgcgactcaatgtggagaacgttccctgtatc
gtgaccttgtgcaaggtgggccataggcacgtggtggacgccacgctgcaggagaaggcg
tgttcagtggccagcctgatcatctccgtcacacacaaggggacggtcacctgtgtcagg
aaggtgggggggggcagcctggacccagagagcatctttgagatgacagagacagggaaa
cgggtagggaaagccctccacgcccccctcatggagcttctgcaggaggaggagagtctg
ggaaagaagagacagaaagtgggctttcttggttag

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