Oncorhynchus kisutch (coho salmon): 109908531
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Entry
109908531 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109908531
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109908531
09142 Cell motility
04820 Cytoskeleton in muscle cells
109908531
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oki00535
]
109908531
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Others
109908531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109908531
NCBI-ProteinID:
XP_031649006
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Position
LG17:17708569..17735594
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AA seq
692 aa
AA seq
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MTGLSAVLKSWVALQTLCLALAQVSGPPGPQGYPGLPGPSGTPGSDGIDGEKGPPGPPGP
TGLKGEPGEPGPGGAPGENGIDGLIGAKGDRGPVGNPGPKGQPGPGGEPGPTGPGLPGLA
GAPGPIGLPGKIGQTGSQGILGASGPPGIPGPPGKPGPPGKFLGGEEGSADFQCPINCPA
GPKGPQGLQGVKGHKGRAGVLGEPGSIGKLGGTKDEVGVSGEQGIQDPPGSYGLRGYPGM
MGPKGEVGPRGYKGINGPVGQPGPPGEEGPQGPPGEAGKKGDLGGRGIKGPHGAVGKKGE
NGLPGIDGKDGTPGIPGIKGAPGQAGRPGGPGHQGTAGLPGSPGTKGGSGGKGEPGPRGH
VGMSGAPGPQGEPGLPGEAGMEGVPGPKGDRGQRGAVGPQGVLGKAGNKGMRGPMGVPGA
QGISGTKGDKGFQGKVGAKGDFGDPGVEGLAGEKGETGLGGEPGPKGQQGVRGELGFNGP
TGDSGKPGDQGPGGLPGPRGLNGERGLPGMPGIVGAAGRDASDQHIIEVVLKMLQERLAA
VAVSAKRAVLGGAGVMGPPGPPGPPGAPGGQGPHGLTGARGIPGMFGASGQIGNTGLKGK
RGAKGDRGNSGKPHPGQPGPPGIPGPPGIDGVARNGKPGERGPQGSAGEAGRPGKAGPTG
LPGFCEAAACLAASAYTSPRLQDSARVKGPGV
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgactggactctcggctgtgttgaagagctgggtcgccctgcagactctgtgcctggct
ctggcccaagtgagcggtcctccaggacctcagggctatcccggcctgcctgggccctct
ggcacccccgggtccgacggcattgatggggagaaaggacctcctggtcctcctggccca
acaggcttgaagggggagccaggtgaacctggtccaggtggagctccaggggagaatggc
attgatggtttgattggagcaaagggagatcggggtcctgtcgggaaccctggacctaag
ggccagcctgggcctggtggtgaacctggacccactggacccggactgcctgggctcgct
ggagccccgggcccaatcggcctccccggtaaaattggacagactggatctcagggcata
ttgggagcatctggacctccaggaattccaggacccccaggaaaaccaggacctccaggg
aagttcttgggaggagaggaaggcagcgcagacttccagtgtccaatcaactgcccagca
gggcctaagggtccccagggactgcagggggtcaagggacacaaaggtcgtgctggtgtg
ctgggagagcctggtagcattgggaaactgggtggtacgaaggatgaggtcggcgtctct
ggggaacagggaatccaggaccccccagggtcctatggattgaggggttaccctggaatg
atgggccccaagggagaggtgggacctcgtggttacaagggcatcaacggaccagttggc
caacctggacccccaggtgaggagggaccccagggaccacctggagaggctgggaagaaa
ggagatttgggtggccgaggtatcaagggcccacatggagccgttggcaagaagggagag
aacggtctgcctggtattgatggaaaggacggcactcctggcatccctggaatcaagggt
gccccagggcaggctgggaggcctggtggtcccggtcaccagggaacagcaggtttgcct
ggcagccccggaaccaagggtggatctggaggcaagggagagcctggtcccagaggccat
gttggaatgtctggtgccccaggacctcagggtgagcctggtcttcctggtgaagctggt
atggagggtgttcctggtcctaagggtgacagaggccagaggggagctgtagggccacag
ggtgtactcggcaaggcaggcaacaagggtatgagaggacccatgggtgttccaggggct
caaggcatctcaggaactaagggagataagggattccaaggaaaagttggggcgaaggga
gactttggggatcctggtgtagaaggcttggctggggagaaaggagagacgggtttgggt
ggagagcctggacccaaaggacagcaaggagtgaggggagagctagggttcaacggcccc
acaggagactcaggtaaaccaggagaccagggaccaggaggactgcccgggcctcgtggc
ctcaacggagagagaggactgccaggcatgccaggaatcgtgggggcagctggacgggat
gcatctgaccagcacatcattgaggtggttctgaagatgctgcaagagcgtctggcggct
gtagcggtgagcgctaagcgtgccgtactgggtggagccggtgtcatgggtccccctggt
cctcctggacccccaggagctcccggtggtcagggcccacacggcctcaccggcgcccgc
ggcatccctggcatgtttggagcctccggccagattggcaacaccggactgaaaggaaag
agaggagcaaagggagaccgaggaaattctggcaaaccacatcctggtcagccaggaccc
cctggaataccaggtcctcctggtattgacggcgtggctcgaaacggtaagcctggcgag
cgaggcccccagggctcggcaggagaggctggtcgtcccggtaaggcgggccccactggt
cttccagggttctgtgaggctgcagcctgcctagctgcctcggcctacacctcccccaga
ctacaggactccgccagggtcaagggccccggagtctaa
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