Oncorhynchus kisutch (coho salmon): 109908555
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Entry
109908555 CDS
T09179
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109908555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109908555
03036 Chromosome and associated proteins [BR:
oki03036
]
109908555
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109908555
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109908555
PBAF complex
109908555
GBAF(ncBAF) complex
109908555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Omp_AT
DUF919
Motif
Other DBs
NCBI-GeneID:
109908555
NCBI-ProteinID:
XP_031649036
LinkDB
All DBs
Position
LG17:complement(20684945..20710048)
Genome browser
AA seq
979 aa
AA seq
DB search
MATTSGGPNIGTPGTSQSPHTTTAQRKKDGNPSARYWESHDSLVQLETVRQWIGKHYKKY
VQADSPSCQALASLTLQMLQFQEEVFGRLAEIRTHTKLPSQCFLDLRPGGGLCHILGTAY
KFKTDQGWRRFDLQNSSRTDRNVEMFTTLEKTLVQNSCLSRPVVYVDQEVDQNLNSRLAD
IITKHQGSLTEDRTQASHHIYPRPAVPDQDWEWVRPVMRKDNYVLVHWGRHPDSYDSWLS
SSDVEGEVQEPPHTHRPWRVHAGWVLDTEVYNEWMNEEDYLVDDRNVPLILRRRVHVTDQ
QDRKFTPLKKRRRSPSPPSSDGKKKGGKKSGGFKRRGPKEEEEDVEEDLTKDMEDPTPVP
NMEEIILPKNVNPKKDSENTPVKGGMMTDLDEIEDDSLLPGGREDEEGREGLRLSDGEDN
ITEQTHHIIVPSYTAWFNYNCIHQIEKRALPEFFNGQNKSKSPEIYLAYRNFMIDSYRLN
PQEYLSSTSCRRNLTGDVCAVMRVHALLEQWGLVNYQVDAESRPLPMGPPPTPHFNTLAD
TPSGLAPLQHRPLQVSSSQQMLFFPERSVEKPSDSQNFGLRTDLYARKHPKSKGASSGRD
WTEQETLLLLEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSASSLGPLA
YQPVPFSQSENPVMSTVAFLASVVDPRVASAAAKAALEEFCRVREEADKVLEFPALNEAE
KADVMDGEKMETDSGSQQSLQADRQTVPEPSGGERLVEGERVKRENAEMTVTEERDCDSG
GTRESDRGEKEEIAGRWREVEQDEGRRLAELELVDGTVTTAAAAALGAAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQSFHSEQLK
HAEMKILQQREQQAPYTPQQHTGQSMPSQMMPTGGNSLTMAPRHPGAPNGMYPPAQPDGI
APTQPGPPSTTIHSRGAET
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacgtctgggggacccaacatcgggactcccgggaccagccagagtccacac
accaccaccgcacagcggaaaaaagacgggaatccgtccgcgaggtactgggagagccac
gactccctggttcagctcgagacggtgcgacagtggatcgggaagcactacaaaaagtat
gtgcaggcagattctccatcctgccaggctctagcctccctcacccttcagatgcttcag
ttccaggaggaagtgttcggcagactggctgaaatccgcacacacaccaaactaccttct
cagtgcttcctggacctgcgcccaggaggcgggctttgccacatccttggcactgcatac
aagttcaagactgatcagggctggagaaggtttgacctacagaactcctccaggacggac
cgaaacgtagagatgtttactactctggagaagaccctggtccagaatagctgtctgtcg
aggcccgtcgtgtatgtggaccaggaggtggatcagaacctgaacagcagactggctgac
atcatcaccaaacaccagggttcgttgactgaggacagaacccaagcctctcaccacatc
tacccccgtccagctgtcccagaccaagattgggagtgggtgcgccctgttatgcggaag
gacaactatgtgttggtgcactggggcaggcaccctgacagctacgatagctggctgtcc
tccagtgacgtagagggagaggtgcaggaacctccacacacacacagaccttggagggtg
catgcaggctgggtgttggatacggaggtgtataatgagtggatgaatgaagaagactac
ctggtagatgacagaaacgttcctctcatcctccgccggagagtccacgtcacagaccaa
caggaccgtaagtttactccactgaagaagagaagacgctccccctctcctccctcttct
gatggcaaaaagaaaggaggaaagaagagtggcgggtttaagaggcgtgggccaaaggag
gaagaggaagacgtagaggaggatctgactaaagatatggaggatccaacacctgtccct
aatatggaagaaattatactgcctaagaatgtgaacccaaagaaggacagtgagaacact
cctgtcaaaggagggatgatgaccgacctggatgaaattgaggatgactctctgcttcct
ggtggaagggaggatgaggagggcagagaggggctgcgtctgtcagatggagaagacaac
atcacagaacaaactcaccacatcatcgtcccgtcctacaccgcctggttcaactataac
tgtattcaccagatcgagaaacgagctcttccagagttctttaacggacagaacaagtcc
aaatctccagagatatacctggcatatcgtaacttcatgattgactcgtaccggctgaac
ccccaggagtacctcagctccacctcctgcagacggaacctgacaggagacgtctgcgcc
gtcatgagggtccatgcgttgttggagcagtgggggttagtgaactaccaggtggatgca
gaaagccgacctctccctatgggaccccctcccacccctcacttcaacacactggctgat
acaccctcaggactggccccgctgcagcacagaccactacaggtgtcgtcctcccagcag
atgttgttcttccctgagagaagtgtagagaagccctcagactcacagaactttggcctc
agaacagacctgtatgccaggaaacaccccaagagtaaaggagccagttcagggagggat
tggacagaacaggagaccctcctactgttggaggcgttagaggtctatagagacgactgg
aacaaggtgtcagaacacgtggggtctcgtacccaggacgagtgcatcctccacttcctg
cgcctgccaatagaagacccttatctggaggactccgcctcctctcttggcccattggcc
taccagccggttcctttcagccaatcagagaatccggtgatgagcaccgtggcgttcttg
gcatccgtggttgatccccgagttgcatccgccgccgccaaggctgctttggaggagttt
tgtcgtgtgcgtgaggaagctgacaaggttctggagttccctgcactcaatgaggctgag
aaggcagatgtgatggatggtgagaagatggagactgactctggctcccagcagtctctg
caggcggatagacagacggttccagagcccagtggaggagagagattagtggagggagaa
cgagttaagagagagaatgctgaaatgacagtcacagaggagagagactgcgatagcgga
gggacccgcgagtcagaccgaggggagaaggaggagattgcgggacgatggagggaagta
gagcaggatgaagggaggagactagcagagctggagttggtagatgggaccgttaccacg
gcagcagctgctgctctaggcgccgctgctactaaggccaagcacctagcagcagtagag
gagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggag
atcaaactgagacactttgaggagctggagaccatcatggaccgagagaaagaggctttg
gagcaacagcgtcagcagctgttgtcagagcgacagagtttccactctgagcagctgaaa
catgcagagatgaagattctacagcagagagagcagcaagcaccatacactccacaacaa
cacacaggccagtccatgcccagccagatgatgcctactgggggaaactctctcaccatg
gccccccgacaccctggagctcccaacggcatgtacccaccagcacagcctgatgggata
gctccgacccagcctggtcctccaagcacaaccatacacagccggggagcagaaacatga
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