Oncorhynchus kisutch (coho salmon): 109908863
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Entry
109908863 CDS
T09179
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04270
Vascular smooth muscle contraction
oki04625
C-type lectin receptor signaling pathway
oki04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
109908863
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
109908863
09153 Circulatory system
04270 Vascular smooth muscle contraction
109908863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109908863
Membrane trafficking [BR:
oki04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
109908863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
NTS
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
109908863
NCBI-ProteinID:
XP_031652005
LinkDB
All DBs
Position
LG18:complement(44792770..44872076)
Genome browser
AA seq
1467 aa
AA seq
DB search
MSDTQSSITDRFPNKANRSSSILSIYHPPDKKPKSDKPSVSASHEFDPTDVLVQKSDCVL
AEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLLEGEAKVVFLGAQTGSSSVTSP
NSPGQPMGERPYSPHDRITSPLPIWEENNSVHNQKVHILQKMLSKEQEDLQAMKEEYSRN
PTPKLLKDIQEAKKHIPQLQGQLSKATRGAQDALRLGDGDDGSMVDMDHTLSSSSHELSR
SSSMMSPVLRGFASASPESLCQRDLLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLSPST
VSSPSSRFVSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQFDP
APLLCYLYADLCKQTNSKETRRVFMDFHNFFIDRGANLKVAVPESLSSDLDRRRTELIPE
ELNRQYVQMVQDTQLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERERAC
AENIITKIEDVLLTTQSTEEEKCTTMQYVILTYMKHLGVKVKEPRGLESKWVRINFLPKI
KKSIKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSVGKAMDLNKPRPQKQLSQPCLEH
LEAGRLRASQSSEGSELIHSSPTNATSPTNSTTNNNASDGGSRDSEFVGTPNSAFPKLSE
GLGDLDSLEYTPNTHFDYSLSPYSLDQLQEEDRESGILEGTPKALRRLDGLGSTEVQSED
DQGGTDSEHDPLNWQQLVGREVLAGLQPHEIKRQEVINELFYTERAHLRMLKVLDNIFYQ
KLTREGILPPADIKNIFTNLEDIVQLHVWISEQMVTIRKRNETSVIDQIGDDLLSWFSRG
EEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVEMQ
RLTKYPLLLENIAKYTDDTVEKDKVKKAGDCCRKILNHVNQAVKESENKQRLEDYQRRLD
LSSLKQTENPMISELKNLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDE
RLILKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELMAQ
TVSEQRMWQRQITQRADAMKVKPNSVIPLPQMDGERDGVEIITAGIAQLSKDPDCISSGS
SQSIDKEGCTASGGEMQTSLPDANPFEGLKPEEEEPNRDEGLYGDPDLADRLPFRMAVEG
LSESDSVGFSPSRADDALKTLSALKQVLVTQLMSQEDGEAAGRSSSGGGRLLRTTSLRTP
VDSRARVAVQNGSGRCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESST
DDDLQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHIRNLQTNLNHLKE
VEAKYHSLLRQRPARSSTDMDDNKDKR
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggtttcccaataaagcaaacagaagcagt
agcattctcagtatataccacccccctgacaagaaacccaagagtgataaaccgtcagtc
tccgcttcacatgagtttgaccctacagacgttctggtgcagaagagtgactgtgttcta
gcggagggaaagcccgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaaccctgtgtttgtgcagctcgtcaaa
gaggatggtgctgcagagcgtgcgggtgtacagacaggtgaccggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtaaagctcataaaatcgggttcc
tatgtggccctcacagtgttggggcgaccccctgggttgccccagatcccccttttggag
ggcgaggctaaggtggtgttcctgggggcccagacagggtcgtcctctgtcacctctcca
aactcccctggacagccaatgggggagcgaccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacaaccaaaaggtgcacattctgcag
aagatgttgtccaaagagcaagaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgcccaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
gggcagcttagtaaggccactcgaggagcacaggatgccctgcgattgggtgatggagat
gatggaagcatggtagacatggaccacacactttcctccagtagccatgaactctcacgg
agcagcagtatgatgtcccctgttctccgtggttttgcatctgcctccccggagagcctg
tgccaaagagacttgttgtcctaccacagcccaaagagcacgccccgagacagcttcaac
tcctgccactcccccgacccagaagacactccagacctggactccctgtccccctccact
gttagcagcccctcctcacgcttcgtctcccagatcatcggagctgaggacgactacttt
gactctgatcaggaacaggtcaatggccagtgcagctgtttccagagcatggagctgctc
aagtccagacctgcccacctggcagcgttcctgcatcatgtcgtctcccagtttgaccct
gcaccgctgctctgctacctctacgctgacctgtgcaagcagaccaactccaaagaaacc
agacgggtgttcatggacttccacaacttcttcatcgaccggggagctaatttaaaagta
gctgttcccgagtccctatcctctgaccttgaccggaggaggacggagttgatccctgag
gagctgaacagacagtacgtccagatggtgcaggacacccagctccctgacatccagagg
aacctggaggactttaggcagaagcgcagcatgggcctaaccctggcggagggggagctg
gcccggctggacacggagcgcgtcagagaccgggtagcactggagagagaacgtgcttgt
gctgaaaacatcatcaccaagatagaggatgttctgttgacaactcaatccacagaggag
gagaaatgcactactatgcagtatgtcatcctcacgtacatgaagcaccttggcgtgaaa
gtcaaagagccacgcggcctagagtccaaatgggtccgcataaacttcctccccaagatc
aagaagagcatcaagaccgagaaggagggaggggaggagaaggtgaaacgcaccaggttt
cccagcatcctcgggcctcctcgccggcccagccgagtcgaccccacgtccgttggcaag
gcaatggacctcaacaagccacggccccagaagcagctgtcccagccctgcctggagcac
ctggaggcgggtcgcttgagggccagtcagtccagcgagggctcagagctcatacattcc
tccccgaccaacgccacctcgccaaccaacagcaccaccaacaacaacgcctctgacgga
ggcagcagagactctgagtttgttgggacccctaactctgccttccccaaactgagcgag
ggtcttggagacttggacagtttagagtacactccaaacacacattttgactacagcctg
agcccctatagcctggaccaactacaggaggaggacagggagagtggaattcttgaagga
acacccaaggctctcagaaggttggatggccttggttctacagaggtgcagagtgaagac
gaccaaggaggcactgactccgagcacgaccccctcaactggcagcagctggtgggacga
gaggtcctggccggactccagccccacgagatcaagagacaggaagtcattaacgagctg
ttctacactgagagggcccacctgcggatgctcaaagtgctggacaacatcttctaccag
aagctcaccagagagggcatactgcctcctgccgacatcaagaacatcttcaccaacctg
gaggacattgttcaactgcatgtttggatatctgagcaaatggtaacaattcggaaaagg
aatgagacgtccgtaatcgaccaaataggagacgacttgctgtcctggttcagcaggggc
gaggaggagaagatcaagcaggcggtgggcacattctgcagcaaccagcccttcgctctg
gagctcatcaagagcaggcagaagaaggactcgcgcttcacctccttcatgcaggaggct
gagagtaaccgactgtgtcgaagactccaactgaaggacatcattcccgtggagatgcag
aggctcaccaagtaccctcttctactggagaacatcgccaagtacacagatgacaccgtg
gagaaagataaggtaaagaaggcgggcgactgctgcaggaagatcctcaatcatgtcaac
caagcggtgaaggagtctgaaaacaagcagaggctggaggactaccagaggcggttagac
ctctcgtctctgaagcagacagagaaccccatgatttcagagctcaagaacctggacctg
accaagaagaagatggtccatgagggaccactgtcatggaaggtcaacaaggacaagact
attgagctgtacaccctgctcctggaggacatcctggtgctgctgcagaagcaggacgag
cggctcatcctcaagtgccatagcaaaaacctgtctggcaccgccgacaccaagcacatc
ttcagccccatcatcaagctcaacgcggtgctggtgcgctctgtggccacagacaacaag
tcgttctttgttctctcaatgtcggacaacggggcccaaatctacgagctgatggcccag
accgtatcagagcagagaatgtggcagcggcagatcacccagagagcggacgccatgaaa
gtgaagccgaacagcgtcatccccttacctcaaatggatggagagagagacggtgtggag
atcatcactgcaggcatagcccaactcagtaaggacccagactgcatctcctctggaagc
agccagtctatagataaagagggctgcactgcctctggaggcgagatgcagacctctctc
ccagatgccaacccatttgaaggactcaagccggaagaggaggagcccaaccgggatgag
gggctttacggggacccggaccttgcagataggctgcccttccgcatggccgtagaaggg
ctcagcgaatcggacagtgtgggcttcagtccttcgagagctgacgatgccttaaagaca
ttgtcagcgctgaagcaagtccttgtgacccagctcatgtcacaggaggacggcgaagcc
gccgggcgctcctcctcggggggtgggcgtcttctcaggaccacgtccctgagaaccccc
gtggacagccgggcccgggtggcggttcagaacggctcagggaggtgcacccaggcaagc
caccctgaggacccggctcaggacctggtgtctggggacacgggcttctttgagtccccc
gaggattatgcagggtacttggtcttggagggctacgggggctcgggggagagcagcacc
gacgacgacctccaggccacggggaagcagctgagcgcctcgcggggctgcggggcagga
gactctgggatcagcctaagattctcctctgcctcacaggcaggcagcatctccagcttc
agccgacaggtcctgtcccacatccgcaacctgcagaccaacctcaaccacctcaaggag
gtagaggccaagtatcacagtctactacgccaaaggccggccaggtcatcgacagacatg
gatgataacaaagataagagatag
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