Oncorhynchus kisutch (coho salmon): 109908928
Help
Entry
109908928 CDS
T09179
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109908928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109908928
03019 Messenger RNA biogenesis [BR:
oki03019
]
109908928
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109908928
RNA polymerase I system
109908928
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
109908928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
109908928
NCBI-ProteinID:
XP_020363317
Ensembl:
ENSOKIG00005034738
LinkDB
All DBs
Position
LG18:39597412..39618281
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEYDEEEEE
DDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKVNEEAEVSNIDHVVLDED
NSGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDPNL
WTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVESYKQTHVKAAI
DGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPS
QNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPAQRLFDAEKIRSLGGDVSHDGDFM
IFEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKEREHN
LQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVK
VIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFTV
GGFAPRSPSISSPMHPGGGGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKGYI
GVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYGTG
SRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDDFEFGYD
DEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYTAPSPQGS
YQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPG
GYNPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQTGVIRSVTGGMCSVFLQDTEK
VVSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GKLEL
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaagacagcgacttctctgacaaccagagtgaacaaagtagcgaagcc
gaggaggtggataaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgac
aaggcagcagaagaggaaggggaagacttggcagatgagtatgacgaagaggaggaagag
gatgatgatgaccgtcccagaaagaaacccaggcatggaggtttcatcttagatgaagcc
gatgtggatgatgagtatgaagatgaagacccgtgggaggaaggtgctgaggatatttta
gagaaagttaacgaggaagctgaggtgtccaacattgaccatgtggtcctggatgaggac
aactctggctcccgcaggctgcagaacctctggagagattccagagaagaggccttgggt
gaatattacatgaggaaatatgccaagcaatcaggaaatgattttcctgggggttctgag
gaactgtctgatgacatcacccagcagcagctgctccctggcgtcaaggatcctaatctt
tggacggtcaagtgtaagattggagaagagagagcaaccgccatcgcattgatgaggaaa
ttcattgcctatcaattcacagacacgcccctccaaatcaagtcggtagtggctcccgaa
catgtcaaaggttacatctatgtggagtcgtacaagcagactcacgtcaaggctgcaatt
gatggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatcaaggag
atgacagacgtcctcaaggtggtcaaagaggtgactaacctcaagcccaagtcctgggtc
cgcctcaagagaggcctctacaaagatgacattgcccaggtggactatgtggagcccagt
cagaacacgatatcactgaagatgattcccaggatagatttggacagaattaaggcccgt
atgagcatgaaagactggtttgcaaagcggaagaagttcaagagaccagcccagagactc
ttcgatgcggaaaagatcaggtcacttggtggggatgtcagccacgatggagacttcatg
atatttgaagctaaccgctacagccgtaaagggttcctcttcaagagctttgccatgtct
gctgtgatcactgaaggagtgaaacccactctgtcagagctggagaagtttgaggatcag
ccagaaggcattgatctggaggtggtgactgaaaccgcaggtaaagagcgtgagcacaac
ctccaggctggggacaacgtggaggtgtgtgaaggggagctgatcaacttgcagggcaag
atcctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggacctgaaggat
ccgctggagttcccggcccatgaattgaggaagtacttccgtatgggtgaccacgtcaag
gtgatagcaggccgctacgagggcgacaccggcctcatcgtacgcgtggaggagaacttt
gtcatcctcttctctgacctcaccatgcacgagttgaaggtcctgccccgggacttacag
ctgtgctctgagacggcgtcaggggtagatgccgggggccagcacgaatggggagagctg
gtccaactggacccccagaccgtgggagttattgtcaggctggagagagagacattccag
gtcctcaacatgcacggcaaggtgctgacggtgcgtcaccaggcagtgaatcggcggaaa
gacaaccgctttgctgtggcgctggactctgagcagaacaacattcacgtcaaagacatc
gtcaaggtcatcgacgggccacactcggggcgtgagggagagatccgccacattttccga
ggctttgccttcctgcactgtaaaaagctggtggagaacgggggcatgttcgtctgcaag
acacgccacgtggtgctggccgggggctccaagcccagagacgtcaccaacttcaccgtg
ggaggcttcgctccgaggagtccaagtatcagcagccccatgcatccaggtggtggtggt
ggtcagcagcagaggggtggtggaggaggtggacagatggggcgtggccggggcaggagg
gacaacgacctgattggacagaccgtccgcatctcccagggaccatacaaggggtacatt
ggagtggtgaaggatgccactgagtcgacagccagagtggagctgcactcaacatgccag
accatctctgtggaccgacagcgtctcaccacaatgggagccaagaggcatggaggaatg
acttccacacacggacgcactcccatgtacggttcccagacccccatgtacgggacaggc
tcccgtacccccatgtatggctctcagacccccttacacgatgggagccgtacaccgcac
tacggctcgcagaccccgctgcatgatgggagcagaacgccggggcagagcggagcgtgg
gaccccaacaaccccaacacaccgtccagggcggacgatgactttgagtttggttatgat
gacgagccctcgccgtcccctcagggctacgggggcacgcctaacccccagacccctggc
tacccagaggtgccctcaccccaggtcaatccccagtacaacccccagaccccaggcacc
ccagccatgtacaacacggaacagtactcgccgtacactgccccctccccacagggctcg
taccaacccagccccagtccccagagctaccatcaggtggcccccagcccagtgggctac
cagaacacacactcaccagccagctaccaccccacaccctcacccatggcataccaggcc
agtccgagccccagcccggtaggctacagccccatgacccccggcgcaccctcccctggc
ggctacaacccccacacccccggctccaacatcgaccagacctcctgcgactgggtcacc
accgacatcctggtgcgggttaaggacaccttcctggacagccaggtggttaaccagacg
ggcgtcatccgcagtgtcacgggtggcatgtgctcagtcttcctccaggacacagagaag
gtggtgagcatctccagtgaacacctagagcctgtcaccccaactaagaacaacaaggtg
aaggtgattttaggggaggaccgcgaggccactgggatcctactgagtattgatggggac
gacggcatcgtcaggatggagctggatgaccagctgaagattctcaacctccgcttcctg
ggcaagctggagctctga
DBGET
integrated database retrieval system
