Oncorhynchus kisutch (coho salmon): 109909008
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Entry
109909008 CDS
T09179
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04137
Mitophagy - animal
oki04140
Autophagy - animal
oki04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109909008
04137 Mitophagy - animal
109909008
04148 Efferocytosis
109909008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109909008
Transcription factors [BR:
oki03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
109909008
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
109909008
NCBI-ProteinID:
XP_020363441
Ensembl:
ENSOKIG00005016891
UniProt:
A0A8C7G9Q6
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Position
LG18:complement(36381132..36399158)
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AA seq
630 aa
AA seq
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MDTKEEPVAQRSGTDQRKVRSRDAARCRRSQETELFYELAHTLPLPRRVSADLDKAAIMR
VTLSFLRMRHLRSAGDTSEERVTDGDEDTMDGFYPRALAGFIMVMTEEGDMIYLGDSVDK
HLGIQQLELLGQSVYDFVHPCDQEELRDLLVPRPGVFKKKPVQQHTEITFFLRMKSTLTV
RGRTVNIKSATWKVLHCTGHMRVCSSDEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTF
LTRHSMDLRFTHCEGRVAELVGYEPEDLIGKSAYEFHHALDSDHVTKSLHILLSKGQVCT
SQYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLK
SDPVSEASEETLCDSDNSSSGELFQQLKENPEDLLQLAPVSGDPIVPLTDFAELSFSLTS
SPDSPPVFPQDLCTPELWTLLSPIFDKPTSSSPTPALIPIEELPIEDEVEKLFAVCPEEV
VQKEDQPEDVEVVDLDMLAPYISMDDDFLLSVQLPGIPDSPSPESPTATRKRSHEQDEDM
PSQLMSQDKRLRHSVSPIEQELLLSYTLLDCLEDTDSPELELGPHPHRRSQLLTDRDPIL
GEAQGRCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaggaagagcctgttgcacaacggtcgggtacggatcagcggaaggtgcgt
tcccgggatgcggcgcgctgcaggcggagtcaggagacggagctgttctacgagctggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcgccacctccgctcagcaggggacacgagtgaggag
cgcgtcacagatggggacgaggacacgatggatgggttctacccccgggcgctggcaggc
ttcatcatggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcgacaaa
cacctgggcatccaacagctggagctgctgggccagagtgtttatgactttgtccaccca
tgtgaccaagaggagctacgggatctcctggtgcctaggccaggtgtattcaagaagaaa
ccagtgcagcaacacacagagattaccttctttcttaggatgaagagcactctgactgtt
agagggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccac
atgcgtgtgtgctccagtgacgaggactcgtcaccccctgcaggcagcttcatgacggtg
ctgtgtgagcccatcccccacccgtctagtgtggagttccctctggaccgcagtaccttc
ctcactcgacacagcatggacctgcgcttcacacactgcgagggcagggtggcagagcta
gtgggatacgagccagaagatctgattggcaaatctgcctacgaattccatcatgccctg
gactcggatcatgtgaccaagagcctgcacatcctgctatctaaaggccaggtgtgcacc
agccaataccgtttcctggctaagagtgggggcttcgtgtgggcagagacccaggctaca
gtcatctacaacaataagacctctcaaccagaggctgtggtctgtcttaactttatcctc
agtgtggtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaag
agtgatcctgtctctgaggcctcagaggagactttgtgtgacagtgacaacagcagcagt
ggagagctcttccaacagctgaaggagaacccagaggacctcctccaactggcccctgtc
tccggagaccccatcgtacccctcacagactttgcggagctgtcgttcagccttacatca
agccctgactcccccccagttttcccacaggacctgtgcactcccgagctgtggacgctc
ctctcacccatattcgacaagcccacctcatcatcaccaacaccagcactgatccccatt
gaggagctgccaatagaggatgaggtggagaagttgtttgccgtctgtccagaagaggtc
gtgcagaaggaagaccagcctgaggacgtggaagtggttgatctggacatgctggcaccg
tatatctccatggatgatgatttcctgctcagcgtccagctccctgggatccctgacagc
ccctccccagagtcccccactgctaccaggaaacggagccatgagcaggatgaagacatg
ccctcccagttgatgagtcaggacaagagactgagacactctgtgtcccccatcgagcag
gaactgcttctcagctacaccctactggactgcctggaggatacagacagcccagagttg
gagctggggccacacccccacaggcggagtcaactgctgacggacagagaccccatcctc
ggggaagcccagggacgatgtgacaccgcagccttgatgagggacctcttcttgtcccgc
ccacctgaccccctgacctcctctctgacttga
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