Oncorhynchus kisutch (coho salmon): 109909032
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Entry
109909032 CDS
T09179
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109909032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109909032
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
109909032
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
HECT type E3
109909032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
WWE
TBCA_PH
Motif
Other DBs
NCBI-GeneID:
109909032
NCBI-ProteinID:
XP_020363480
Ensembl:
ENSOKIG00005005841
LinkDB
All DBs
Position
LG18:complement(35724762..35778455)
Genome browser
AA seq
2065 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVTGRLQSEQVKHKTNSPPESRRPKSKASKAA
PSSASGQSRGHSSRSSSLSLSVASFVLQDDPDAAGTSEREPTGHQSKSEGTTRGLKRSSA
PDLNNTCTPTPAKKSKSHPPPRDHTTESKKGPAKSSKKRPLAPELPTPTGRGQSSKSGAS
GASPTQKRKKADSLPGLSSTAGSLPNRTDGRSAKPTKLASKSAASAKAGCSTVTDSSSSA
STSSSSSTGPNSATSTQGARLKQGKDQNKARRSRSASSPSPRRSTRDREQAKAAVSSKFE
WASRFSPKVNLPKPKLSLPGSSKPETSSKPGPSGLQAKLASLRKSTKKRSESPPAELPSF
RRSTRQKTTGSCASTSLCSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEAP
QGASGTASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHR
TIGSGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITL
LQMEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEM
LSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLT
QRLTHQDKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMF
IMVVRMFSLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELT
SLICELMPCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQ
NGEDEISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARA
QLMKEDPELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNH
AVSSHIASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLT
SPPKACTSGTASLCTTTISTATTTAASNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKR
KRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNS
EPSRTAGVSGMARAPPKDSVSNNRDKIKAWIKEQACKFVARYFNTEKIDGSNPALNVLQR
LCTATEQLSLQMDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSR
DVRLKRFLHVFYGCPIPGMEPAGRLEPSENGPLLSLVHKMNNCLSQMEQFPVKVHDFPSG
NGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGY
GRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFS
LQSEEERESTDDEANPLGRAGIWTKTHTIWYKPVRDDEDGTKDAVGGKRGRAQTAPTKTS
PRNAKKQDELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFY
LYDNAVSKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTR
QMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQ
DLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGT
KYMFSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWML
RHETSISSHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDLSQTRETLQQALESLNMNGCSV
EDLGLDFTLPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFES
VFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVGFLFDVLSSFD
AEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPD
YSSIEIMRKKLLIAAREGQQSFHLS
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcacgggaaggttgcagtcagagcaggtaaaa
cataaaacaaattcccctcctgaaagtagaagacctaaatctaaggcttccaaagccgca
cccagctcagcctctggccagtccagggggcacagctcaagaagtagcagtctgtcactg
tctgtggcttcatttgtgctgcaagacgacccagacgccgcagggacatccgagcgagag
ccaacaggccaccaatccaagagtgaaggcaccacccgagggttgaagagaagttctgca
cctgatctcaacaacacctgcacccccaccccagcaaagaagtccaaatcccaccctcca
cccagagaccataccactgagtccaagaaaggccctgccaagtcctccaagaagagaccc
ctggctccagagctgcccacgcccacaggccgcggccagagcagcaagagcggggcctct
ggggcctcaccaacccagaaacggaagaaggctgactccctccccggtctgagcagcact
gctgggtccctccccaaccgtaccgacggcagatctgcaaaacccaccaagctggcgtcg
aaatcggccgcctcagccaaagctgggtgtagcaccgtgactgactcctcctcttctgcc
tccacctcttcctcctcctccaccggcccaaacagtgccacctccacgcagggcgccagg
ctcaagcagggcaaagaccagaacaaggcacgtcgctcccgctccgcctccagcccttcc
ccacgccgaagcacccgcgacagggagcaggccaaagctgcagtctcgtccaagtttgag
tgggcctcccgcttcagtcccaaagtcaatctgccaaagcctaaattgtccctacctggc
tcctccaagcccgagacctcctccaaacctgggccctcaggactacaagccaaactagca
agtttgaggaagtccactaagaagcgcagcgagtctcctccagcagagctccccagcttt
cggcggagcacacgtcagaagaccacgggctcctgcgccagcaccagtctgtgcagtcgg
cgaggctcaggcctgggcaagcgcggggcagccgacgctcgccgacaagagaagatggcc
gactcggacaacaaccaggacggggccaactcctcggccgcccgcactgacgaggccccg
cagggggcttcaggtacagcttctagttcagtggccggagctgtagggatgaccacatcc
ggtgagagtgagtccgatgactctgaaatgggcagactccaagccctgttggaggccagg
ggtctaccccctcacctctttgggcccctgggaccccgtatgtcccagctgtttcacaga
accataggcagtggagccagctccaaagctcagcagctgctgcagggcctgcaggccacc
ggtgacgagtcccagcagctccaggccgccatcgagatgtgccagctgctggtgatgggc
aacgaggagacgctaggaggcttccctgtgaagagcgtggtgcccgctctgatcacattg
ttgcagatggagcataattttgacattatgaaccacgcctcccgtgctctcacttacatg
atggaggcgctgcctcggtcctctgctgtcgtcgtggacgccatccctgtcttcctggaa
aagcttcaggtgatccaattcattgatgtggcggagcaggccctgactgccttggagatg
ttgtcaaggcgtcacagcaaagccatcctgcaggctggtggcctggctgactgtctgctg
tacctggagttctttagcatcaacgcccagaggaacgccctggccattgccgccaactgc
tgccagagcatcacccctgacgagttccactttgtctctgactctctgccactgctgacc
cagagactcacacaccaggataagaaatctgtcgaaagcacttgcctctgttttgccaga
ctggtggataactttcaacacgaggagaacctgctgcagcaggtggcctcgcgggacctg
ctgaccaacatccaacagctgctggtggtcaccccgcctgtgctcagctcgggcatgttc
atcatggtggtgcgcatgttctccctcatgtgctccaactgcccctgtctggccgtgcag
ctcatgaagcagaatattgcagagactctgcgcttccttctgtgcggcgcggccaacggt
agctgtcaggagcagattgacctggtgccccggagcccacaggagctctatgaactcacc
tcactcatctgcgagctgatgccctgccttcctagagagggcatctttgctgtggacctc
atgctgaagaagggcagtgcccaggccacagagggggccatctggcagtggagggacgac
cggggcctgtggcacccctacaaccgcatcgacagtcgcatcattgagacggcccaccag
aacggagaggacgagatcagcctgtccaccctgggccgcgtctacactattgacttcaac
tctatgcagcagataaacgaggacactggcacagcacggggtatccagaggaaacccaac
cccttagccaaccccactactgggggtcaccaggaggtgagacgggaggatgcacgggcc
cagctgatgaaggaggaccctgagctggccaagtgcttcatcaagaccctgtttggggtg
ctgtacgaggtgtacagctcgtcggccggcccagccgtcagacataagtgcctccgagcc
atcctcaggatcatcttcttcgccgatgccgagctcctcaaggacgtgctgagaaaccac
gctgtgtccagtcacattgcctccatgctgtccagccaagacctgaagattgtagttggc
tctctgcagatggccgagatcctcatgcagaagctgcctgatgtattcagtgtcttcttc
agaagagaaggtgttatgcaccaggtgaagaacctggctgagtcagaggccttccttacc
agtcccccaaaggcgtgcaccagcggcacagctagcctgtgtaccaccaccatcagcact
gcgaccactacggcggcctccaacgccaccccagacctgggctcgcctagcttccagcac
agcatggacgactcactagacctcagtccacaggggcggttaagtgatgtgctgaagaga
aaacgtctgcctaagagagggcccagaaggcccaagtactctcctcccagggatgacgac
aaagtagacaatcaggccaagagtcctaccactactcaatcccccaaatcctccttcttg
gccagtctgaaccccaagacctggggcaagctgggcgcccagaccaacagcaccaactct
gagccctctcgcacggccggggtgagcggcatggcacgcgcccctcccaaggactcagtc
tccaacaacagggacaagatcaaggcttggataaaagagcaggcctgtaagtttgtggcc
cgctacttcaacactgaaaaaattgatggcagcaaccccgcactgaatgtactccagaga
ctctgcaccgccacggaacagctcagcctgcagatggacggtggtgtggagtgcctcgtg
gagatctgcagcatcgtgtcagagtcggacgtgtcatcgttcgagatccagcatagcggc
ctggtcaagcagctgctgctctacctgacctccagcagtgaccgtgacctggtcagccgt
gacgttcgcctcaagaggttcctgcacgtcttctacggctgcccgatcccggggatggag
ccggcaggccgcctggagccatctgagaacggacccctgctgtcactggtgcacaagatg
aacaactgcctaagccagatggagcagtttcctgtcaaggtgcacgacttccccagtggc
aacggcaatgggagcagagggtctcaggccctgaagttcttcaacacacaccaactcaag
tgtcagctgcagaggcacccggactgtaccaatgtgaaacagtggaaggggggcccggtg
aagattgatcccctggccttggtacaggcaattgaacgttacctggttgtccgaggttac
ggacgaatcagagaggaggatgaggacagtgacgatgatggttcagacgatgaaattgac
gaatcgctggcggcccagttcctgaactctggcagcgtgcgccaccggctacaattctac
atcggcgaccacctgctgccttacaacatgacggtgtaccaggcagtgcggcagttcagc
ctgcagtccgaggaggagagagagtccacagacgacgaggccaacccgctcgggcgggct
ggcatctggaccaaaacccacaccatatggtataagccagtgagggatgatgaggatggt
actaaggatgcggtgggaggtaagaggggccgggcacagaccgcccccaccaagacctca
ccccgcaacgctaagaaacaggacgagctgtggcacgacggcgtgtgtcccagcgtggcc
agccccttggagatgtacctcatgtcggagcccccggagagcatcaccttcgacgacccg
tctctggatgtcaacctgctgctgagggtgctgcactccattagtagttactggttctac
ctgtacgacaatgctgtgtctaaggagatcatccccaccagtgagttcatcaacagtaag
ctgacagccaaggccaaccgacagctgcaggaccctctggttatcatgaccggcaacatc
cccacctggctcacagagcttgggaagacctgtcccttcttcttcccgttcgacacacgg
cagatgctcttctatgtaacagcgtttgaccgtgaccgggccatgcagcgcctcctcgac
accaaccccgagatcaaccaatcagattctcaggacagccgcgtggcgccccgcctcgac
aggaaaaagcgaacgataaaccgtgaggagctgctgaagcaggcggagtcagtgatgcag
gacctcggcagctccagagccatgctggagatccagtatgagaacgaggtgggcacaggg
ctgggtcccaccctggagttctacgccctggtctcccaggagctgcagagggccgacctt
gggctgtggaggggtgaggaggtcaccctgtccaaccccaaaggaagccaagaagggacc
aagtacatgttcagctcccgagggctgtttgccgttcccttcggcaggacaaccaaaccg
gcgcacatcgccaaaatcaagatgaagttccgcttcctgggcaagctgatggccaaggcc
ataatggacttcagactgctggacctgcccctggggctgcccttctacaagtggatgctg
cggcacgagacatccatcagctcacacgatctggtcaacatcgacccgggcgtggccaag
tccatccagcacctggaggatatcatccgccagaagaagaggctggagcaggacctctcc
cagacaagggagaccctgcagcaagctctggagagtctcaacatgaacggctgctctgtg
gaggacctgggcctggacttcaccctgcctggtttccccaacattgagctgaagaagggg
ggcaaggatgtccctgtcaccatctacaacctggaggagtacctcaggctggtggtctac
tggacgatgaacgaaggcgtgtcccggcagtttgagtctttcagggaagggttcgagtcg
gtcttccccctgcatcacttgcagtatttctaccctgaagagttggatcagctgctttgt
ggcagcaagtccgagacctgggacgtcaagaccctgatggagtgctgtcgtcccgaccat
ggctacacgcatgacagtcgtgctgttgggttcctgtttgatgtgctcagtagttttgac
gcagagcagcagagactcttcctgcagtttgtcacaggaagccccaggctgcctgttgga
ggtttccgtagtctgaacccgccgctgaccattgtgcggaagacttttgagtcaacggag
aacccggacgacttcctgccctcggtaatgacctgcgtcaactacctgaagctgcccgac
tactccagcatcgagatcatgcgcaagaaactgttgattgcggcccgagagggccagcag
tccttccacctgtcctga
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integrated database retrieval system
