Oncorhynchus kisutch (coho salmon): 109909134
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Entry
109909134 CDS
T09179
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03030
DNA replication
oki03420
Nucleotide excision repair
oki03430
Mismatch repair
oki03440
Homologous recombination
oki03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109909134
03420 Nucleotide excision repair
109909134
03430 Mismatch repair
109909134
03440 Homologous recombination
109909134
03460 Fanconi anemia pathway
109909134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109909134
03032 DNA replication proteins [BR:
oki03032
]
109909134
03400 DNA repair and recombination proteins [BR:
oki03400
]
109909134
Transcription factors [BR:
oki03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109909134
DNA replication proteins [BR:
oki03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109909134
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109909134
MMR (mismatch excision repair)
109909134
DSBR (double strand breaks repair)
HR (homologous recombination)
109909134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
109909134
NCBI-ProteinID:
XP_020363673
Ensembl:
ENSOKIG00005021545
UniProt:
A0A8C7HBI5
LinkDB
All DBs
Position
LG18:complement(28014202..28070667)
Genome browser
AA seq
620 aa
AA seq
DB search
MFTLHSYKLSFNMNNMLTKGAIEDLTKGSNNLPNPILQLVNIRKIDGGSGPARFRLMMSD
GQHSMSSFMLSAQLNPMAEDNRLAPNCICQLKRNVTNVLKDGRHVVVILDMEVVKSADEV
AGKIGEPTPYVEGQSKAPQSAPNPSVHPLQPQNGNYGTMNKGPSREFGGKKAMPLSAMPS
TPGGSSKVVPIASLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVT
AFTQEVDKFYSIIETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVP
MVQCNFISIADLEAREKDAILDVIGVCKSVADVTRLTTKNNREVSKRTLNLMDQSGKLVE
VTLWGEEAENFDGSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDQ
EGHSMDGQSLTEARTGGGGGGNTNWKTLTDIKTEHLGHGDKADYFSCIATIVYIRKENCL
YQACPSQDCSKKVVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAE
AILGQNAAYLGQLKDSNEAAFEEIFQQANFHTFIFRNRVKLETYNDESRIKATVMEVKPV
DHKEYSKRLIMNIRKMAATQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgttcactctacatagctataaactcagcttcaacatgaataacatgctgacaaaggga
gcgatagaggatctaaccaaaggctctaataatttaccgaaccccattcttcaattagtg
aacatccgtaaaattgatggaggcagtggaccagcccgctttcgtctgatgatgagtgat
ggacagcactcaatgtcctcgttcatgctctccgcccaactcaacccaatggctgaggac
aaccgactggccccaaactgtatctgtcagctgaagaggaatgtgaccaatgtcctaaag
gatggacggcatgtggtggtcatattagacatggaggtggtaaagtctgctgatgaggtg
gctggaaagatcggagagcccacgccttacgtggaaggtcagagtaaagccccacagtca
gcccccaatccctcagtccaccccctgcagccccagaatggaaattatggcaccatgaac
aaaggtcccagcagagagtttggggggaagaaggccatgcctctgtctgcaatgcccagc
actcctgggggatcctccaaagtcgtgcccattgccagcctcaacccctaccagtcaaag
tggaccatccgagcacgtgtcaccaacaagagcggcatccgcacctggagcaactctcgt
ggggacggcaagctgttctctatggagattgtggatgaaagtggagagatcagagtgact
gcctttacccaggaggtggacaagttctacagcattatcgagactggcaaggtgttctac
atctccaagggatcactgaagatcgccaacaagcagtactcgtccctgaagaatgactat
gagatgaccctaaatggagaatccaccatcatcccctgtgaggacacccaggacgtaccc
atggtgcagtgcaacttcatctccatcgctgacctggaggcccgagaaaaggacgccatt
ttggatgtgattggagtgtgtaagagcgtggctgacgtgacccgcctcaccaccaagaac
aaccgtgaggtctccaagaggacgctcaacctgatggaccagtctggtaaactggtggag
gtcaccctgtggggagaggaggcagagaactttgatggatctgggcagcccatcttggcc
atcaaaggggccaagctgtcggactatgggggaagatctctgtctgcttcgttcagcagc
accgtcatggtcaaccccgacatccctgaggcatacaagctgcggggctggtatgaccag
gagggccactctatggatggccagtctctgacggaggcgaggacaggtggaggaggagga
gggaacaccaactggaagaccctgactgacatcaagacggagcacctcggacatggagac
aaggcagactacttcagctgcatcgccaccatagtgtacatccgtaaggagaactgtctg
taccaggcgtgccctagtcaggactgcagtaagaaggtggtggaccagcagaacggcatg
ttccgctgtgagaagtgtgacaaagagttccccaacttcaagtaccgactcatcctctct
gccaacatagcagactacggggacaaccagtgggtgacctgcttccaggagagtgctgaa
gccatcctgggacagaatgctgcttacctagggcaactcaaagactcgaatgaagctgcc
ttcgaggagatctttcagcaggccaacttccacacgttcatcttccgcaacagagtcaag
ctggagacctacaatgacgagtcccggatcaaggccacggtgatggaggtgaaacctgtg
gaccacaaggagtacagcaagagactcatcatgaacatcaggaagatggctgccacccaa
taa
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