Oncorhynchus kisutch (coho salmon): 109909564
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Entry
109909564 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: retinal-specific phospholipid-transporting ATPase ABCA4
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109909564
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oki02000
]
109909564
Transporters [BR:
oki02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109909564
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
ACT_13
AAA_22
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
109909564
NCBI-ProteinID:
XP_020364170
Ensembl:
ENSOKIG00005045425
LinkDB
All DBs
Position
LG18:62331426..62380896
Genome browser
AA seq
2344 aa
AA seq
DB search
MGTGSQVRLLLWKNWTLRKRQKMRFFMEIMWPVVLFIGLVWLRTANPLYRQHECHFPNKA
MPSTGILPWIQGIFCNANNPCFQYTTRGEGPGLVSNYNDSILARFYLDAQELLLSDPEFL
QLGRLWRELFTMSTFMDTLRTSPEQVSGRGLKVEDILKDDETLTSYLLRDVPLSEFVVNE
LVNAKIRPEQFVFGVPDLHLKDIACSQTLLEQFIIFPSRRGLYRVHSSICALTPQRLQTI
EDRLYANVDFFKLFRQLPRVLDNHSSGVDLHFWARVLSATYEKLRELSERNSSKALVEVM
SPLLQSQVGSPPSFRQLMGAVSSLVCGYMEGGFSRVASFNWYEDNNYKAFMGINDSTRGG
QGQYTYDHTATPFCNDLMKELESNPITRIMWSSVKPMIMGKILYAPDSPAVRKIIRNANT
TFEELERLRTMGRAWEEVGPQVWAFFQDSVQMNMIRDTIRNPTVRDYIDRSLQDTEFSSK
HILNFLYNRPIEDRDYDMANFDWRNVFNFTDQVIRMMNQYGECLILDKFSGLNDEEQMTH
RALSLMGESKFWAGLVFMDTYPWTTKVPPHVRFKIRMDIDSVERTNKIKDRYWDPGPRAD
PVDDLRYVWGGFAYLQDMIEHGIIRTQTGKDWPLGVYLQQMPYPCYVDDLFMLTLNRCFP
IFMVLAWVYSVSMTVKSIVLEKELRLKETLKTMGVTNGVLWVTWFIDSFLMMAASTSLLT
VIIMGGKVLNYSNPLILFLFLLTFTTATIMQCFLLSVFFNKANLAAACSGIIYFTLYLPH
ILCFAWQDRITKDDKIMASLMSQVAFGFGTEYLSRYEEQGLGLQWDNIQTSPLEGDEYSF
LTSISMMALDTVLYAVLAWYLDNVFPGQYGISRPFYFPILPSYWLNSRPPKPKELEKPRF
DNLVNQAEEKQKTNHEPGDEQKTKAPDEELPSCKHQDKRERLGKGKTEEEEEEEEEENKK
NQEEKQNGEKEGQPSHAYFEGEPAGLVEGVCVQNLVKVFGRGQKPAVDGLSITFYESQIT
AFLGHNGAGKTTTLSILTGMFPPTSGTASIYGKDIRTDMDTIRHSLGMCPQHNILFHHMT
VEEHILFYSLLKGRSLSEAQLEVENMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGG
AKVVILDEPTSGVDPYSRRSIWDLLLKYRSGRTVILSTHHMDEADLLSDRVAIISQGRLH
CCGSPLFLKNCFGAGFYLTLVRRMKYEGPKMKCDCTDECSCKCSTCTTYKEESPQAKTPD
RQMDGDLSSITGLVHHHVPEARLIEAIGQELTYLLPNQGFQPRAYASLFRELEETLSDIG
LSSFGVSDTSLEEIFLKVTADGEAKSGKTTQDQRLWQQTPRPSVGHNKVALYVDQSEEAD
GETEANRQGNSGGSEGSEGRGSRQVKGVCLVLKQLFALLIKRFHHATRSHKDFFAQIVLP
ASFVFVSLMFTTIVPPFGEYPSLTLSPWMYGRQFTFFSNERILDPEMRYFGEVLLNKPGF
GTRCMVDEPLEDFPCNNITTEWEMPLLNPALIDMLDGPEWTAVNPSPGCQCSTPRKLTML
PVCPEGAGGITPPQRIQSTGDVVVDLTGRNISDYLVKTYPSLIKASLKSKYWVNEQRYGG
ISVGGQLPVLDVDPKTIQDAASQLGRLLNVTGGKYSKQTLKDIGTFLRYMESEYNVKVWY
NNKGWHAMVAFMNVANNAILRANLPKDASLDVYGITTINHPLNLTKEQLSEVTVLSTSVD
AMVAICVVFAMSFVPASFVLYLIQERVTQAKHLQFVSGVSPVIYWMANFLWDMVNYSISA
ALVVAIFMVFDKKCYTSPTNLQPLTALLMLYGWSVTPMMYPMSYIFSIPSTAYVSLSCIN
LFIGINSSAITFILDLFDSTAALYKCNQLLKKMLLIFPHYCLGRGLIDMAMNQAVTDVYA
RFGEDFSLDPYSWDFVGKNLVFMAVEGFVYFIMNILIQYRFFLDHWITDCKTDPIMEEDV
DVAQERERIYNGGSKNDILKIRDLTKTYMGKTKPAVDRICVGVSPGECFGLLGVNGAGKT
TTFKMLTGDTDVSSGEASVTGHSILTNILDVHQNMGYCPQFDAIDDLLTGREHLHLYARL
RGVPESEISRVADWAIQKLGLADYAGHTAGTYSGGNKRKLSTAIAMIGCPPLVLLDEPTT
GMDPHSRRFLWNSIMSVIQDGRAVVLTSHSMEECEALCTRLAIMVNGTFQCLGTIQHLKY
KFGDGYVVTMKIQASTPGCPPDLNPAEAFMESTFPGCVQREKHYNTLQYEIASSSLARIF
QLVLANKDRLNIEDYTVSQTTLDQVFVNFAKQQSGEDDGMVLHPRAAGARRKEIKVTPLS
CLGK
NT seq
7035 nt
NT seq
+upstream
nt +downstream
nt
atgggtacgggcagtcaagtccgattgctgctgtggaagaactggacccttcgcaagaga
caaaagatgcggttcttcatggagattatgtggccagtggttctgttcattggactagtg
tggctgaggacagctaaccctttataccgtcaacatgagtgccactttcccaacaaggcc
atgccctcgactggcatccttccatggatccaaggaatcttctgcaatgccaacaaccca
tgcttccagtacaccaccaggggagagggccctgggctcgtctccaactacaacgattcc
atactagctcggttctacttggacgcccaggagcttcttctgagtgacccagagttcctg
cagctgggtcggctctggagggaactgttcaccatgagcaccttcatggacaccctgcgg
accagcccagaacaggtctcaggtcgagggctgaaggtagaggacattctgaaggatgat
gagaccctgacgtcctatctcctaagggatgttcctctgtcagagtttgtggtcaatgag
ctggtcaatgccaagatcaggcctgagcagtttgtgtttggcgtccctgacctccacctg
aaggacattgcctgcagtcagaccctgctggagcagttcatcatcttccccagccgcagg
gggctgtacagggtgcacagcagcatttgtgccctcacaccacagagactacagaccata
gaggacaggctctacgccaacgtggacttctttaaactcttccgtcagcttccccgggtg
ttggataaccactccagcggtgttgacctacacttctgggccagagtactctctgccacc
tacgaaaagctgcgagagttgtcagagaggaacagctccaaagcgctggtggaggtgatg
tcccccctgctccagtcccaggtgggctctcctccatctttcagacagctgatgggggct
gtgtccagcctggtgtgtggctacatggaggggggcttctctcgggtggcctccttcaac
tggtatgaggacaacaactacaaggccttcatggggatcaacgatagcacccggggagga
cagggacagtacacctacgaccataccgccactccgttctgtaatgatctgatgaaggag
ctagagtccaatcccatcaccaggatcatgtggagctctgtcaagcccatgatcatgggg
aagatcctctacgcacccgactccccagccgtcagaaagatcatcagaaacgccaacacc
acatttgaggagctggagaggctgaggaccatgggtcgggcctgggaggaggtgggccct
caggtctgggccttcttccaggacagcgttcagatgaacatgatcagggataccatacgg
aatcccacggtgagggactacattgacaggagtctacaggacacagagttctcctcaaaa
cacatcctcaacttcctgtacaacaggccaatagaagacagggactatgacatggccaac
tttgattggaggaatgtcttcaacttcacagaccaagtcatccgtatgatgaaccagtat
ggagagtgtctgatcctggataagttctctgggctgaacgatgaggagcagatgacccac
agagctctgagtctgatgggggagagtaagttctgggctggcctggtcttcatggacacc
tacccctggaccaccaaggttccaccccatgtccggttcaagatccgcatggacatcgac
tcagtggagcgcaccaataagatcaaggacagatactgggaccctggtcctagggccgac
cctgtggatgatctccgttacgtgtggggggggtttgcctatctgcaggacatgatagag
catggcatcatcaggacccagacaggcaaggactggcccctcggtgtctacctacaacag
atgccgtacccatgctacgtggacgacctcttcatgctgacattgaaccgttgcttcccc
atcttcatggtgctggcgtgggtctactcagtgtctatgactgtgaagagcatcgtcttg
gagaaggagctcaggctcaaagagaccctgaagaccatgggggtcaccaatggggttctg
tgggtcacatggttcatagacagcttcctcatgatggctgccagcacttccctgctcact
gtgatcattatgggtggtaaggtgttgaactacagcaaccctctgatcctgttcctgttt
ctgctaaccttcaccacggccaccatcatgcagtgtttcctactcagtgtcttctttaac
aaggccaacctggctgcagcctgcagcggtatcatctacttcaccctctacctgccccac
atcctctgctttgcatggcaggaccgcatcaccaaggatgacaagatcatggcgagcctg
atgtcccaggtggcgtttggctttgggacagagtacttgtcccgttatgaggagcagggt
ctgggtctgcagtgggacaacatccagaccagccctctggagggggatgagtactccttc
ctcacctccatctctatgatggccctggatactgtactctacgcagtccttgcctggtac
ctcgacaacgtcttcccagggcagtatggaattagtcggccattttatttccccatcctg
ccctcctattggctcaactccagacccccaaagccaaaagagttggagaaacccaggttt
gacaacctggtaaaccaggctgaagagaagcagaagaccaatcatgaaccaggtgacgag
cagaagactaaggcaccagatgaggagctgccatcctgcaaacaccaggacaaacgagag
aggctggggaaggggaaaacagaggaggaggaggaggaggaggaggaggagaacaagaag
aaccaggaggaaaaacaaaatggagaaaaagagggtcagcccagccatgcctactttgag
ggggaaccggcaggactggtggagggtgtgtgtgttcagaacctggtcaaggtgtttggt
aggggacaaaaacctgcggtagacggactgagcatcaccttctatgagagccagatcact
gctttcctggggcataatggagctgggaagaccaccaccttgtctatcctgacggggatg
ttccctcccacctctgggacagcctccatctatgggaaggacatccggacagacatggac
accatcaggcactctctgggcatgtgtccccaacacaacatcctctttcaccatatgacc
gtagaagaacacatcctgttctacagcctgctgaaggggaggtctctgtctgaggctcag
ctggaggtagagaacatgctggaggatctgggcctgccccacaagagagacgaggaggca
cagaacctctcaggcggcatgcaaaggaagttgtctgttgctatggcgtttgtgggcggt
gccaaggtggtgatcctggacgagcccacatcgggggtggacccctactccagacgatct
atctgggacctactactcaagtaccgatcaggacgtacagtgattctgtccactcaccac
atggacgaggctgacctgttgagtgaccgtgtggcgatcatctctcagggtcgtcttcac
tgctgcggctccccgctcttcctcaagaactgcttcggtgccgggttctacctcaccctg
gttcgacgaatgaaatacgagggacccaagatgaagtgtgactgtactgatgagtgttcg
tgtaaatgctccacctgtaccacgtacaaagaagagtcacctcaagccaaaaccccggac
agacagatggacggtgacttgtcaagcatcacagggctggtccaccaccatgtcccagag
gcccgtttgatcgaggctatcggccaggagttgacctacctgctgcccaaccagggcttc
cagcccagggcctacgcctccctcttcagagagctggaggaaaccctctctgacatcggc
ctcagcagcttcggggtctccgacacatcactggaggagatattcctgaaagtgacagcg
gacggtgaagccaaatctggcaaaactacacaagaccagagattgtggcagcagacacct
cgacccagtgtaggacacaacaaagtagcactttatgtcgaccaatctgaagaggcagac
ggggagaccgaggccaacaggcaggggaattctgggggctcggagggcagcgaggggcgg
ggctctagacaggtcaaaggtgtctgtctggtcttgaaacagttatttgccctgctcatc
aaacggtttcaccacgccacaagatcacataaggacttctttgctcagatagttttgcct
gccagttttgtgttcgtatcactgatgttcactacgatcgtacctccgtttggagagtac
cccagcctgacccttagtccctggatgtatggacgacagttcaccttcttcagtaacgag
cgtatcctggaccctgagatgaggtactttggagaggtgctgctgaacaagcctggcttt
gggactcgctgcatggtggatgaacctctggaggatttcccatgtaataacatcacaacg
gagtgggagatgccgctactgaaccctgctctgatagacatgttggatggaccagagtgg
accgcagttaacccttccccaggctgccagtgtagtacccctaggaaactcaccatgctg
cctgtctgccctgagggagcaggggggataacaccaccacagaggatccaatcgacaggt
gatgttgtggtggacctaacaggcaggaatatctctgattacctggtgaagacttacccc
tccctcatcaaggccagtttgaagagcaaatactgggtgaatgaacaaaggtatggaggt
atatctgtcgggggacagcttcctgtgttagatgtggaccctaagaccatccaggacgca
gcgtcacagctgggacgactgctcaatgttactgggggtaaatactccaaacaaactctg
aaggacataggaaccttcctccgctacatggagagtgaatacaatgtcaaggtgtggtac
aacaacaagggctggcatgccatggtggccttcatgaacgtggccaacaacgccatcctc
agagccaacctgcccaaagatgccagcctggatgtatacggcatcaccaccatcaaccac
cctctcaaccttaccaaggaacaattgtctgaagtcactgttctgagcacctcagtggat
gcgatggtggctatctgtgttgtcttcgccatgtcctttgtcccagcctcctttgtgctc
tacctcatccaggagagggtgacccaggccaaacacctccagttcgtcagcggggtcagt
cccgtcatctactggatggccaacttcctctgggacatggtgaattactctatcagtgca
gcactggtggtggctattttcatggtctttgacaagaagtgctacacgtcgccaaccaac
ctccaacccctgacagccctgctcatgctctatgggtggtctgtgacgcccatgatgtac
cccatgtcctacatcttcagtattcccagcacagcctacgtctctctgtcctgcatcaac
ctgttcattggcatcaacagcagtgctatcaccttcatccttgacctgtttgacagcaca
gcggcgctgtataagtgtaaccagctgctgaagaaaatgctgctgatcttcccccactat
tgtcttggccggggtctgatcgacatggctatgaatcaggctgttactgacgtctatgcc
cgctttggtgaggacttcagtctggacccctacagttgggactttgtagggaagaacctg
gtcttcatggctgttgagggctttgtctatttcatcatgaacatcctgatccagtaccgc
ttcttcctggatcactggatcacagattgtaagacggatcccatcatggaggaagacgtg
gatgtggcccaggagagagaacgcatctataatgggggaagcaagaatgacatcttaaag
attagagacctcaccaagacatacatggggaagacaaagccagctgtggacaggatctgt
gtgggagtgtcacctggggagtgctttgggctcctgggtgtgaacggagcagggaagacc
accacctttaaaatgctgaccggagacactgatgtcagctcaggagaagcctctgtcact
ggtcacagcatccttaccaatatcctggacgtgcaccagaacatgggctactgcccccag
tttgatgccatagatgatctgctgactggcagagagcacctccatctgtatgcccgcctc
agaggggtgcctgagtccgagatcagcagggtggcagactgggcaattcagaagctgggt
ctggctgactatgctggccacacagccgggacctacagcggcggcaacaagagaaaacta
tccacagccattgccatgatcggctgtcctcctctggtcctgctggacgagcccacgaca
ggcatggacccccactcacgtcgtttcctgtggaactccataatgagtgtaatccaagat
ggccgagcagtggtcctcacctcacacagtatggaggagtgtgaggctctgtgtacccgt
ctggctattatggtcaatggcaccttccagtgtcttggtaccatccagcacctcaaatac
aagtttggtgatggttacgtggtcacgatgaagatccaggcctccacaccaggttgtccc
ccagacctgaacccagccgaggccttcatggagagcaccttccctggctgtgtccagagg
gagaagcactacaacactctgcagtatgaaatcgcctcttcctccctggctaggatcttc
cagctggtcctggccaacaaggaccgcctcaatatagaggactacaccgtctcccagacg
acactagatcaggtgtttgtgaactttgccaagcagcagtcaggagaggacgacggcatg
gtgctgcacccaagggccgctggggcacggagaaaagaaatcaaggtcacacccctaagt
tgtctggggaaatga
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integrated database retrieval system
