KEGG   Oncorhynchus kisutch (coho salmon): 109909598
Entry
109909598         CDS       T09179                                 
Name
(RefSeq) integrin beta-1-like isoform X1
  KO
K05719  integrin beta 1
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03271  Virion - Rotavirus
oki04145  Phagocytosis
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04514  Cell adhesion molecule (CAM) interaction
oki04517  IgSF CAM signaling
oki04518  Integrin signaling
oki04530  Tight junction
oki04810  Regulation of actin cytoskeleton
oki04820  Cytoskeleton in muscle cells
oki05100  Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03271 Virion - Rotavirus
    109909598
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109909598
   04514 Cell adhesion molecule (CAM) interaction
    109909598
   04517 IgSF CAM signaling
    109909598
   04518 Integrin signaling
    109909598
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    109909598
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109909598
   04530 Tight junction
    109909598
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109909598
   04810 Regulation of actin cytoskeleton
    109909598
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    109909598
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oki04131]
    109909598
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oki04147]
    109909598
   04515 Cell adhesion molecules [BR:oki04515]
    109909598
   04090 CD molecules [BR:oki04090]
    109909598
Membrane trafficking [BR:oki04131]
 Endocytosis
  Phagocytosis
   Integrins (complement receptors)
    109909598
Exosome [BR:oki04147]
 Exosomal proteins
  Proteins found in most exosomes
   109909598
Cell adhesion molecules [BR:oki04515]
 Integrins
  Integrin beta subunits
   109909598
CD molecules [BR:oki04090]
 Proteins
  109909598
SSDB
Motif
Pfam: Integrin_beta Integrin_b_cyt Integrin_B_tail EGF_integrin I-EGF_1 EGF_2 EGF_Teneurin
Other DBs
NCBI-GeneID: 109909598
NCBI-ProteinID: XP_031652240
Ensembl: ENSOKIG00005041004
LinkDB
Position
LG18:complement(58008029..58051244)
AA seq 797 aa
MDLKLLLISTLLGVICYSSAQQEGNECIKANAKSCGECIQVGAKCGWCMDHGFLKQGEAT
STRCDELGSLRKRGCSSTKVENPRGSQRVLKNKAVTNRNKGEGKLRPEDITQVQPQKLTL
SLRSGEPQSFNLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKNLGTHLMLEMSKITTDFK
IGFGSFVEKTVMPYISTTPAKLLNPCTGDQNCTSPFSYKNVLKLTSNGQEFNTLVGQQHI
SGNLDSPEGGFDAIMQVAVCGEHIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGKC
HLENNMYTMSHYYDYPSIAHLVQKLSDNNIQTIFAITEEFQPVYKELKNLIPKSAVGILS
ANSSNVINLIIDAYNSLSSEVILENSKLPEGVTIMYQSRCKNGVTGEGEMGRKCSNISIG
DDVSFTISITAKQCPKMGKPETIKIKPLGFNEEVEITLNFICECDCHKDGIENSDICHNG
NGTYECGACRCNEGRIGRQCECSTNEVTSEDLDKSCRKDNGTDICSNNGDCVCGTCECKK
RENPEERYSGMFCECDNFNCDRSNNKLCGGHGHCECRVCICDANWTGSACDCSLDTTTCL
ASNKQICNGRGTCECGTCKCTNPKFQGPSCEICPTCPGVCAEHKECVQCRAFGTGEKKDT
CERDCSYFNLIKVKDRDKLPQPGQAFPLMHCKERDANDCWFYYTYAVNKTEKEVHVVETL
DCPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENP
IYKSAVTTVVNPKYEGK
NT seq 2394 nt   +upstreamnt  +downstreamnt
atggacctgaaactacttctgatttcaacgttgttaggagtcatttgttacagcagtgct
cagcaagaagggaacgagtgcatcaaggctaatgccaaatcctgtggggagtgtattcaa
gtgggagcgaaatgtggctggtgcatggaccacgggttcctgaagcagggtgaggccaca
tcgacccgctgtgacgagctggggtccctgaggaagagaggttgtagctccaccaaggta
gagaacccccgaggcagccaacgggtcctgaagaacaaggctgttaccaaccgcaacaag
ggagaaggaaaactccgaccagaggacatcacacaggtccagccacagaaactcaccctc
agcctcagatctggtgaaccccagtcttttaacctgaagttcaaacgggccgaggattac
cccattgacctctactacctgatggacctgtcctactccatgaaggacgatctggaaaac
gtcaagaacctgggaacacatctgatgctggagatgtcaaagatcacaactgattttaaa
atcggttttggttcctttgtagaaaagacagtgatgccttacattagcaccaccccagcc
aagctgctgaacccctgtactggggaccagaactgcaccagtcccttcagctacaagaac
gtcctgaagctgaccagcaatggacaggagttcaataccctggtgggacaacagcatatc
tctggaaacctggactcaccagagggaggcttcgatgccatcatgcaagtggctgtgtgt
ggtgagcacattggctggaggaacgtcacccgtctgctggtgttctccactgacgctggc
ttccactttgctggagacgggaaactgggagggatagttttgcccaacgatgggaaatgt
cacctggagaacaacatgtacacaatgagccactactatgactacccctccatcgctcac
ctggttcagaaacttagcgacaacaacatccagacgatctttgccatcacagaggagttc
cagcctgtttacaaggagttaaagaatctcattcctaaatctgcagtggggatactctct
gctaactccagcaatgttatcaacctcattattgatgcctacaattctctttcctcagag
gtgattctggagaacagcaagctaccagagggagtgaccataatgtatcagtcacgctgc
aagaacggagtgactggtgagggagagatgggaagaaaatgctccaatatctcaatcggt
gacgacgtgtctttcaccataagcatcacagctaagcagtgtcctaaaatgggcaaacca
gagaccatcaagatcaaacccctagggttcaatgaggaggtggagatcactctgaacttc
atctgcgagtgtgactgtcacaaagatggcattgagaacagtgacatctgccacaacggc
aacgggacatatgaatgtggagcctgcaggtgcaatgagggccgtattggtagacagtgt
gagtgcagcaccaacgaggtgaccagcgaagacctggataagagctgccgtaaagacaac
ggtacagacatctgcagcaacaacggagactgtgtgtgtggaacctgtgagtgcaagaag
agagagaacccagaggagcgctacagcgggatgttctgcgagtgtgacaacttcaactgt
gaccgctccaacaacaaactctgtggaggacatggtcactgtgagtgcagggtgtgtata
tgtgatgccaactggacaggcagtgcctgtgactgttctctggacaccacgacctgcctg
gcttcaaacaagcagatctgtaacggacgaggcacctgtgagtgtggcacctgcaagtgt
actaacccaaagttccagggccccagctgtgagatctgtcctacctgtccaggggtctgc
gcagaacacaaggagtgtgttcagtgcagggcctttgggacgggggagaagaaggacacg
tgtgagagagactgtagctacttcaacctgatcaaggtgaaggacagagacaagctgcct
cagccaggacaggccttccccctgatgcattgtaaggagagggatgccaacgactgctgg
ttctactacacctacgctgtcaacaagacagagaaggaggtccatgtggtggaaacacta
gactgccctgcgggccctgacatcatccccatcgtggctggcgtggtggcgggcatcgtc
ctgatcggcctggctttgcttctcatctggaagctgctcatgatcatccacgacaggaga
gagttcgccaagtttgagaaggagaagatgaatgctaaatgggacacgggcgaaaaccct
atctacaagagtgctgttacgacagtggtcaaccccaaatatgaaggcaaatga

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