KEGG   Oncorhynchus kisutch (coho salmon): 109910238
Entry
109910238         CDS       T09179                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03020  RNA polymerase
oki03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109910238
  09124 Replication and repair
   03420 Nucleotide excision repair
    109910238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oki03021]
    109910238
   03019 Messenger RNA biogenesis [BR:oki03019]
    109910238
   03400 DNA repair and recombination proteins [BR:oki03400]
    109910238
Transcription machinery [BR:oki03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109910238
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109910238
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109910238
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 109910238
NCBI-ProteinID: XP_031654124
Ensembl: ENSOKIG00005024672
UniProt: A0A8C7HGY3
LinkDB
Position
LG19:complement(62612086..62618653)
AA seq 172 aa
MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
PNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttatcatatttccctggagcatgagatcctgctccaccctcggtactttggtccc
aatctcctgaacactgtgaaacagaagctcttcacagaagtggagggaacatgcacaggg
aaatatgggttcgtcattgcggtgaccaccattgacaacattggtgcaggtgtcatccaa
ccaggcaggggatttgtgctttaccccgtcaagtacaaggctattgtcttccgtccattc
aaaggcgaggtggtagatgccgtggttacccaggtcaacaaagttggactgttcacagag
atcggccccatgtcctgtttcatctctcgtcactccattccctcagagatggagtttgac
cccaactcaaatcctccctgttataagaccactgatgaggacattgtaatccaacaggat
gatgagattcggttaaagatcgtgggaacaagagtggataaaaacgacattttcgctatt
ggatccctcatggacgattacctgggtcttgtcagctga

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